PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02933-snap-gene-0.14-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 306aa    MW: 32746.1 Da    PI: 9.7156
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02933-snap-gene-0.14-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-063962225
                                               -S---SGGGGTS--TTTTT-SS-S CS
                                    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                                               k ++C  f+ t  C++G+ C+F H
  maker-scaffold02933-snap-gene-0.14-mRNA-1 39 KSKPCTKFFSTSGCPFGEACHFLH 62
                                               7789******************** PP
2zf-CCCH25.62.2e-08106131227
                                                -S---SGGGGTS--TTTTT-SS-SSS CS
                                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                                kt+lC+ f     Ck+Gd+C+FaHg+
  maker-scaffold02933-snap-gene-0.14-mRNA-1 106 KTRLCNKFKSAEGCKFGDKCHFAHGE 131
                                                8***********************96 PP
3zf-CCCH345e-11273297126
                                                --S---SGGGGTS--TTTTT-SS-SS CS
                                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                                +kt+lC +f + G C +G+rC+FaHg
  maker-scaffold02933-snap-gene-0.14-mRNA-1 273 FKTKLCENFTK-GSCTFGERCHFAHG 297
                                                69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.4083765IPR000571Zinc finger, CCCH-type
SMARTSM003560.393764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-63863IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-73962IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-43962IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-15102136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-8103135IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014104131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61104132IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-6106131IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.61E-15169252IPR004088K Homology domain, type 1
SMARTSM003221.2E-10179249IPR004087K Homology domain
PROSITE profilePS5008414.32180244IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.3E-16180250IPR004088K Homology domain, type 1
PfamPF000131.2E-10182246IPR004088K Homology domain, type 1
CDDcd001054.31E-14182245No hitNo description
Gene3DG3DSA:4.10.1000.103.8E-16270303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.549272299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-9272302IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-7272298IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8273297IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEYGGGRKRF RPEAALNGNG GFKKSKPEME SFPTGIGSKS KPCTKFFSTS GCPFGEACHF  60
LHYVPGGIKV VSQMMNVAGN PTLPQPARNS AAPPSFPDGS SPPAVKTRLC NKFKSAEGCK  120
FGDKCHFAHG EWELGKPTAP SYEDSRAMGP MPGRMGGRVE PHPSNHHQSS HRAMASFGTS  180
ATAKILVDAS LTGAIIGKNG VNSKHICRVT GAKLSIKEHD SDPTRRNIEL EGTLDQIDQA  240
SAMVQELIAN VRATSGPPMR NHATTASAPA NNFKTKLCEN FTKGSCTFGE RCHFAHGVEE  300
LRKTGM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886247.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-106C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2N9H7D61e-180A0A2N9H7D6_FAGSY; Uncharacterized protein
STRINGcassava4.1_012715m1e-172(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-76C3H family protein