PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold02959-augustus-gene-0.14-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 303aa MW: 34343 Da PI: 7.67

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold02959-augustus-gene-0.14-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.5	3.9e-51	11	135	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskr 64 lppGfrFhP+deelv++yL kkv++ + +l + evd++k+ePwd+p+++ + k+wyf+++r maker-scaffold02959-augustus-gene-0.14-mRNA-1 11 LPPGFRFHPRDEELVCDYLMKKVTNCDPSL---MIEVDLNKCEPWDIPETACVGGKDWYFYTQR 71 79*********************99777...789********7777799***** PP NAM 65 dkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d+kyatg r+nrat+sgyWkatgkd++vl+ +g+lvg++ktLvfy+grapkg+k+dWvmhe+rl maker-scaffold02959-augustus-gene-0.14-mRNA-1 72 DRKYATGLRTNRATASGYWKATGKDRTVLR-RGSLVGMRKTLVFYQGRAPKGRKSDWVMHEFRL 134 *************************9.999**************************98 PP NAM 129 e 129 e maker-scaffold02959-augustus-gene-0.14-mRNA-1 135 E 135 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.1E-59	2	159	IPR003441	NAC domain
PROSITE profile	PS51005	55.984	11	158	IPR003441	NAC domain
Pfam	PF02365	4.7E-27	12	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MSNISMVEAK LPPGFRFHPR DEELVCDYLM KKVTNCDPSL MIEVDLNKCE PWDIPETACV 60 GGKDWYFYTQ RDRKYATGLR TNRATASGYW KATGKDRTVL RRGSLVGMRK TLVFYQGRAP 120 KGRKSDWVMH EFRLEGPLGP PKISSPKEDW VLCRVFYKNR EVAAKPSMGN CYDDTGSSTL 180 PALMDSYINF DRPQTHADEY EQVPCFSIFN QNQTSPFFTH MTNMEPNLPT TKFNTETTFK 240 GIPNNIGTCL DPFPCDAKVL KAVLSQLSNM DSNPNMKGSP SLGEGSSESY LSEVGMPNIW 300 SHY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-49	6	165	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-49	6	165	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-49	6	165	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-49	6	165	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-49	6	165	15	174	NAC domain-containing protein 19
3swm_B	1e-49	6	165	15	174	NAC domain-containing protein 19
3swm_C	1e-49	6	165	15	174	NAC domain-containing protein 19
3swm_D	1e-49	6	165	15	174	NAC domain-containing protein 19
3swp_A	1e-49	6	165	15	174	NAC domain-containing protein 19
3swp_B	1e-49	6	165	15	174	NAC domain-containing protein 19
3swp_C	1e-49	6	165	15	174	NAC domain-containing protein 19
3swp_D	1e-49	6	165	15	174	NAC domain-containing protein 19
4dul_A	1e-49	6	165	12	171	NAC domain-containing protein 19
4dul_B	1e-49	6	165	12	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023915297.1	0.0	NAC domain-containing protein 21/22-like
Swissprot	Q84TE6	1e-126	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A371ESD3	0.0	A0A371ESD3_MUCPR; NAC domain-containing protein 21/22
STRING	GLYMA15G40510.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10010	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.2	1e-120	NAC domain containing protein 1

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]