PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02994-augustus-gene-0.11-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family AP2
Protein Properties Length: 423aa    MW: 46333.6 Da    PI: 8.5046
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02994-augustus-gene-0.11-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.73e-1370126155
                                            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                    s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  maker-scaffold02994-augustus-gene-0.11-mRNA-1  70 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDEEEAAARAYDLAALKYWG 126
                                                    57*******************66667777755555********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-1470135IPR016177DNA-binding domain
PfamPF008471.5E-970126IPR001471AP2/ERF domain
PROSITE profilePS5103218.46571134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-1271135IPR001471AP2/ERF domain
SMARTSM003801.8E-1971140IPR001471AP2/ERF domain
PRINTSPR003674.2E-57283IPR001471AP2/ERF domain
PRINTSPR003674.2E-5116136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MASSSSDPGL KSEAGGGGGG GGSSGEAAMV AKDELFVYRG GLKKAKKERG CTAKERISKM  60
PPCAAGKRSS IYRGVTRHRW TGRYEAHLWD KSTWNQNQNK KGKQGAYDEE EAAARAYDLA  120
ALKYWGPGTL INFPVTDYTR DLEEMQNVSR EEYLASLRRV KSSGFSRGIS KYRGLSSRWE  180
PFGRMGASEY FNSTNYGTGD DPAAESEYLG NFCSERKVDL TSHIKWWGPN KTRQSDAALK  240
SSEETKHAGD IGVELKTLEL AVQPTEPYQM PCLGMSNEGR KHKGSTVSAL SILSRSAAYK  300
SMEEKASKKP ENSIDNDENE DKNTINKVDY GKAVEKSTSH DVASERLGVA LGMSGGMSLQ  360
RNVYPLTPFL SAPLLTNYNT VDPLADPILW TSLVPVLPSG LSRTAEVTKT ESSSTYTFFH  420
ADE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023928669.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK21e-159AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2N9IGH80.0A0A2N9IGH8_FAGSY; Uncharacterized protein
STRINGXP_004493481.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-155AP2 family protein