PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03027-augustus-gene-0.19-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 176aa    MW: 20772.3 Da    PI: 7.4357
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03027-augustus-gene-0.19-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-192175357
                                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                                       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                                                   k++++++eq++ Le +F +++++  +++ +LA++lgL+ rqV vWFqNrRa++k+
  maker-scaffold03027-augustus-gene-0.19-mRNA-1 21 KKRKLSNEQVNLLEYYFCNEHKLESQRKDRLASELGLEPRQVAVWFQNRRARWKN 75
                                                   45689************************************************95 PP
2HD-ZIP_I/II115.53.1e-3721112293
                                    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyea 65 
                                                    kkr+ls+eqv+lLE  F +e+kLe++rK +la+eLgl+prqvavWFqnrRAR+k+++lE++y+ 
  maker-scaffold03027-augustus-gene-0.19-mRNA-1  21 KKRKLSNEQVNLLEYYFCNEHKLESQRKDRLASELGLEPRQVAVWFQNRRARWKNQKLEEQYSG 84 
                                                    9*************************************************************** PP

                                    HD-ZIP_I/II  66 LkraydalkeenerLekeveeLreelke 93 
                                                    Lkr+++++  e+++Le+ev +L+++l+e
  maker-scaffold03027-augustus-gene-0.19-mRNA-1  85 LKREHETVLIEKCQLESEVLKLKDQLSE 112
                                                    *************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.8921676IPR001356Homeobox domain
SMARTSM003891.9E-161980IPR001356Homeobox domain
SuperFamilySSF466891.07E-182185IPR009057Homeodomain-like
PfamPF000461.1E-162175IPR001356Homeobox domain
CDDcd000864.62E-152177No hitNo description
Gene3DG3DSA:1.10.10.605.3E-212383IPR009057Homeodomain-like
PRINTSPR000319.3E-64756IPR000047Helix-turn-helix motif
PROSITE patternPS0002705174IPR017970Homeobox, conserved site
PRINTSPR000319.3E-65672IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
ESKPRRRRKK NKGGDASELA KKRKLSNEQV NLLEYYFCNE HKLESQRKDR LASELGLEPR  60
QVAVWFQNRR ARWKNQKLEE QYSGLKREHE TVLIEKCQLE SEVLKLKDQL SEAEKEIQRL  120
SQNVETVPTN STSSSPSVET MAEPFLGEFE MEGYNEAFYT PAFCYAHAMD WFNQYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1523RRRKKNKGGDASELAKKRK
2723RKKNKGGDASELAKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023905908.11e-102homeobox-leucine zipper protein ATHB-40-like
SwissprotO232085e-58ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A2N9H7U22e-90A0A2N9H7U2_FAGSY; Uncharacterized protein
STRINGGorai.007G051100.12e-69(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.12e-52homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]