PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03134-snap-gene-0.16-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Dof
Protein Properties Length: 224aa    MW: 24950.8 Da    PI: 8.9144
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03134-snap-gene-0.16-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof86.42.7e-273680246
                                     zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGal 46
                                               ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+G  l
  maker-scaffold03134-snap-gene-0.16-mRNA-1 36 PQEHLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGQDL 80
                                               68999************************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-183580IPR003851Zinc finger, Dof-type
PfamPF027012.2E-233880IPR003851Zinc finger, Dof-type
PROSITE profilePS5088421.254094IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDGTAQWPKG QGVGLVKPLE GVAPSTRPML ERRARPQEHL NCPRCNSTNT KFCYYNNYSL  60
TQPRYFCKTC RRYWTEGQDL NLGFPAFQKY HDVSQYVQVP KIENNNSNHH NSGSASSTHL  120
SALELLRTGM ASRGLNTFIP PSMPDSTTLY SSSGFPFHEF KPTHGFSIDG LGSRYGAQEN  180
GGKLLFPFEE LKQISSTNQQ VEQNKGQGGP SGYWSSMLNG GGPW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4785022e-35AM478502.2 Vitis vinifera contig VV78X197834.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023870674.11e-145dof zinc finger protein DOF2.5-like
SwissprotQ433857e-46DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A2I4EG136e-96A0A2I4EG13_JUGRE; dof zinc finger protein DOF2.5-like
STRINGEOX956554e-87(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.42e-47Dof family protein