PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03139-augustus-gene-0.13-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 274aa    MW: 32333.2 Da    PI: 9.1246
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03139-augustus-gene-0.13-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.43.8e-192269148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   +g+WT eEd ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
  maker-scaffold03139-augustus-gene-0.13-mRNA-1 22 KGPWTSEEDRLLIEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 69
                                                   79********************************************97 PP
2Myb_DNA-binding51.72e-1675119147
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                    rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  maker-scaffold03139-augustus-gene-0.13-mRNA-1  75 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119
                                                    7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.411773IPR017930Myb domain
SuperFamilySSF466893.48E-3019116IPR009057Homeodomain-like
SMARTSM007171.4E-162171IPR001005SANT/Myb domain
PfamPF002491.5E-172269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-232376IPR009057Homeodomain-like
CDDcd001671.72E-112469No hitNo description
PROSITE profilePS5129419.3574124IPR017930Myb domain
SMARTSM007171.4E-1474122IPR001005SANT/Myb domain
PfamPF002491.2E-1375119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2477123IPR009057Homeodomain-like
CDDcd001671.20E-979120No hitNo description
SuperFamilySSF819954.18E-6142181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MNWEVMAGQL GWGMMEDEGW RKGPWTSEED RLLIEYVRLH GEGRWNSVAR LAGLKRNGKS  60
CRLRWVNYLR PDLKRGQITP HEESIILELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF  120
KKKAKVTSDA SEKAKNRILR RQQFHHHQQQ QQQQQHQQLQ QQQQHQQQQQ QQQQQQLQLN  180
QVDLKRIMAL LDENDNRATC VPQMRQEMTT MYPNTNEEQG YFYSLLNSSV SVPEAANEDI  240
IWDGLWNLDD VHGNFNAASV TSRATLHNLV APFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-272212427128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023921356.11e-168transcription factor MYB13
TrEMBLA0A2I4GSD21e-140A0A2I4GSD2_JUGRE; transcription factor MYB24-like
STRINGEOY062371e-135(Theobroma cacao)
STRINGcassava4.1_013947m1e-136(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.14e-91myb domain protein 305