PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03144-snap-gene-0.35-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 140aa    MW: 15500.7 Da    PI: 10.2092
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03144-snap-gene-0.35-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249e-082321747
                                               HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                            Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwqky 47
                                               ++lG+++Wk I++++ +++t+ q+ s+ qky
  maker-scaffold03144-snap-gene-0.35-mRNA-1  2 NKLGKHDWKEISQKFVTTKTPVQIASHAQKY 32
                                               79****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001677.59E-4133No hitNo description
SuperFamilySSF466896.18E-8138IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-9136IPR006447Myb domain, plants
PROSITE profilePS5129412.896137IPR017930Myb domain
PfamPF002491.8E-5232IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
LNKLGKHDWK EISQKFVTTK TPVQIASHAQ KYFLRQARTN KMKRRPSVFD LALQNEVEIS  60
PSAPKDCQVS QTKKSDAVKS LEVGMPGSVL FIPNPMVNFA SQSLGLSEIA RDAEELTIGQ  120
PQSFQEINVS TQTSGAIRVT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023877702.14e-38uncharacterized protein LOC111990118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.14e-19MYB_related family protein