PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03167-augustus-gene-0.16-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 350aa    MW: 38669.1 Da    PI: 6.0647
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03167-augustus-gene-0.16-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08194241455
                                                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                    +h+ +Er RR++iN ++  L+el+P +    sk    a +L + +++++sLq
  maker-scaffold03167-augustus-gene-0.16-mRNA-1 194 SHSLAERARREKINARMKLLQELVPGC----SKISGTALVLDEIINHVQSLQ 241
                                                    8*************************9....788889999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-15188259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.40E-9188245No hitNo description
PROSITE profilePS5088814.526190240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-14190258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-6194241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-8196246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEPNSASYVP GSCPTRPEPE ETGLESFQFR DEIQRLMTVP PENASSFTAL LELPATQAMQ  60
LLHSSPHSAA GGGDEHKPYS SSSSFTNGNL TFPSNKALIE RAAKFSVFAA AEISPETSSV  120
PSNSSANLDK VKTEPAETDS NPDSSNKTQK LAKRKEREKK GKDSAKKSKN ESCEDAEKLP  180
YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC SKISGTALVL DEIINHVQSL  240
QRQVELLSMR LAAVNPRIDF NFDSVFATEG GPLIDSNIPS MVSPSMWPEN PFTGNRQNFQ  300
QQWNFDALHQ PLWGREEENH IFITPENSLL SYDSSANSAS LHSNQLKMEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023901336.10.0transcription factor bHLH48-like
SwissprotQ8VZ021e-104BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A2N9GAL40.0A0A2N9GAL4_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_85.1201e-160(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-100bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]