PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03291-snap-gene-0.20-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 150aa    MW: 17225.2 Da    PI: 4.7703
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03291-snap-gene-0.20-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.51.2e-09811333790
                                       FAR1  37 kegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                                                +eg++++ ++++e+   +r+et +gCk ++ +kk  d++w v k+++ HnHel 
  maker-scaffold03291-snap-gene-0.20-mRNA-1  81 REGFHSQCNEDNERLGPERPETIVGCKTMIGLKKV-DDTWIVCKFVEGHNHELL 133
                                                79999999999888889*****************9.9***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-681133IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MIANNKEPET ISICDMVDDL VHDESEINED QNNVDLSLDD SNQHFACNRH SEPRLDMIFE  60
NLEAVYAYYN AYARRRGFSI REGFHSQCNE DNERLGPERP ETIVGCKTMI GLKKVDDTWI  120
VCKFVEGHNH ELLTPKSTSL LRGHRVITSA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023879877.12e-74protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2N9EWC01e-46A0A2N9EWC0_FAGSY; Uncharacterized protein
TrEMBLA0A2N9FLB91e-48A0A2N9FLB9_FAGSY; Uncharacterized protein
TrEMBLA0A2N9GL142e-48A0A2N9GL14_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1463426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-09FAR1-related sequence 5