PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03443-augustus-gene-0.17-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 249aa    MW: 27121.8 Da    PI: 6.0523
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03443-augustus-gene-0.17-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.86.9e-07155181430
                                                    HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                                            HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                                                    +h+ +Er RR++i +++  L++l+P +
  maker-scaffold03443-augustus-gene-0.17-mRNA-1 155 SHSLAERARREKISERMKILQDLVPGC 181
                                                    8************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-8149188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-5149190No hitNo description
PROSITE profilePS508889.788151212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-8154188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-4155182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDPPAMMNEG SPYNLSEIWQ FPSMNGGGEL VMGLRRPQFG DVNGATNREV SGNDPMSLDQ  60
RGVHGGGGNG GGSRKRRDLE DDTSNSKGVD SGNGANDCEG KRLKTSGSGD ENLDSKAEAE  120
PSSGKHVEQN TQTPPEPPKQ DYIHVRARRG QATDSHSLAE RARREKISER MKILQDLVPG  180
CNKFLSMKLE AVNTRMTPGL EVFPSKDFGQ QTFDTSGMAF GSQTPREYTR SSSPEWLHMQ  240
VGGGFERTT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023895615.11e-146transcription factor BHLH089-like isoform X1
RefseqXP_023895616.11e-146transcription factor BHLH089-like isoform X1
RefseqXP_023895617.11e-146transcription factor BHLH089-like isoform X1
SwissprotQ69WS38e-60BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A2N9EC221e-133A0A2N9EC22_FAGSY; Uncharacterized protein
STRINGEMJ245431e-107(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-78BIG PETAL P