PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03517-augustus-gene-0.24-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family SBP
Protein Properties Length: 109aa    MW: 12653.6 Da    PI: 8.3798
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03517-augustus-gene-0.24-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP51.62.6e-1624561850
                                                   HHHTT--HHHHT-S-EEETTEEEEE-TTTSSEE CS
                                            SBP 18 hrrhkvCevhskapvvlvsgleqrfCqqCsrfh 50
                                                   ++rhkvCe h+ka+vvlv+g++qrfCqqCs+f 
  maker-scaffold03517-augustus-gene-0.24-mRNA-1 24 KKRHKVCERHAKAAVVLVTGIRQRFCQQCSKFE 56
                                                   589*****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.391182IPR004333Transcription factor, SBP-box
PfamPF031104.4E-132256IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.102.5E-142356IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.8E-142461IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
EEQEQECSDP YEDGEEEEVE YTRKKRHKVC ERHAKAAVVL VTGIRQRFCQ QCSKFECGPG  60
FMKFHNLMIT KRVVGTSWLV TMSGGGKPMQ TFRQRINKND KLPLWVVAC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-11SBP family protein