PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03538-augustus-gene-0.18-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 235aa    MW: 27281.6 Da    PI: 6.5062
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03538-augustus-gene-0.18-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.8e-161461148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   +g+W +eEdell   v+++G ++W++Iar  g++R++k+c+ rw++yl
  maker-scaffold03538-augustus-gene-0.18-mRNA-1 14 KGAWQEEEDELLSTFVTLMGERRWDSIARASGLKRSGKSCRFRWLNYL 61
                                                   79********************************************97 PP
2Myb_DNA-binding49.31.1e-1573112748
                                                    HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                    eE+++++++++++G++ W++Iar+++ gRt++++k++w+++l
  maker-scaffold03538-augustus-gene-0.18-mRNA-1  73 EEEQIILRLHELWGNK-WSRIARRLP-GRTDNEIKNYWRTHL 112
                                                    9***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.823961IPR017930Myb domain
SuperFamilySSF466892.85E-2612108IPR009057Homeodomain-like
SMARTSM007177.2E-131363IPR001005SANT/Myb domain
PfamPF002491.3E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-191568IPR009057Homeodomain-like
CDDcd001679.94E-91661No hitNo description
PROSITE profilePS5129425.99462116IPR017930Myb domain
SMARTSM007179.4E-1466114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2369115IPR009057Homeodomain-like
PfamPF002494.4E-1471112IPR001005SANT/Myb domain
CDDcd001672.54E-1173112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAFKAAMQGE KLRKGAWQEE EDELLSTFVT LMGERRWDSI ARASGLKRSG KSCRFRWLNY  60
LHPNLKHGHI SIEEEQIILR LHELWGNKWS RIARRLPGRT DNEIKNYWRT HLRKKAQARH  120
EGNFYCELKN GEQDFFFQKG DMSGLNHNYK NHGTAEDFCG TSDDSFDALG SSNFALISSP  180
CETQLSDPIL ELIKDQSEIK HHEGCNSLES CFCYPALIPD DSNIWDYAGF LWNMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-22121162105MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-221211656159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-221211656159MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-221211625128MYB TRANSFORMING PROTEIN
1mse_C1e-22121162105C-Myb DNA-Binding Domain
1msf_C1e-22121162105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023911310.11e-161transcription factor MYB27-like
SwissprotQ9SCP11e-59MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A2N9F1X01e-145A0A2N9F1X0_FAGSY; Uncharacterized protein
STRINGEOY079618e-94(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131692631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.14e-62myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]