PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03547-augustus-gene-0.16-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 149aa    MW: 17093.6 Da    PI: 10.357
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03547-augustus-gene-0.16-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM131.46.7e-41151371128
                                            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskr 64 
                                                    lp G+rF+Ptdeelvv+yLk+kv + ++++ +vi+e+d+++++Pw Lp  +   +++ yfFs+r
  maker-scaffold03547-augustus-gene-0.16-mRNA-1  15 LPIGYRFRPTDEELVVHYLKRKVFSIPFPA-SVIPEFDVFQTDPWGLPGDL---NEKRYFFSSR 74 
                                                    699***************************.99***************544...4678****98 PP

                                            NAM  65 dkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                                                    ++   ++++++ra+ sgyWk  gkdk++l++ ++++vg++k L+f +g+++ g+kt+Wvmheyr
  maker-scaffold03547-augustus-gene-0.16-mRNA-1  75 KSV--NENKSKRAAGSGYWKPIGKDKQILASgSNQAVGMRKALMFCEGKRSYGTKTRWVMHEYR 136
                                                    776..567999******************9966778***************************9 PP

                                            NAM 128 l 128
                                                    l
  maker-scaffold03547-augustus-gene-0.16-mRNA-1 137 L 137
                                                    8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-459145IPR003441NAC domain
PROSITE profilePS5100544.29915149IPR003441NAC domain
PfamPF023658.4E-2516137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MDQRPNFVIQ GGFKLPIGYR FRPTDEELVV HYLKRKVFSI PFPASVIPEF DVFQTDPWGL  60
PGDLNEKRYF FSSRKSVNEN KSKRAAGSGY WKPIGKDKQI LASGSNQAVG MRKALMFCEG  120
KRSYGTKTRW VMHEYRLVGS ETNAYSTQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-331314915154NO APICAL MERISTEM PROTEIN
1ut4_B1e-331314915154NO APICAL MERISTEM PROTEIN
1ut7_A1e-331314915154NO APICAL MERISTEM PROTEIN
1ut7_B1e-331314915154NO APICAL MERISTEM PROTEIN
3swm_A1e-331314918157NAC domain-containing protein 19
3swm_B1e-331314918157NAC domain-containing protein 19
3swm_C1e-331314918157NAC domain-containing protein 19
3swm_D1e-331314918157NAC domain-containing protein 19
3swp_A1e-331314918157NAC domain-containing protein 19
3swp_B1e-331314918157NAC domain-containing protein 19
3swp_C1e-331314918157NAC domain-containing protein 19
3swp_D1e-331314918157NAC domain-containing protein 19
4dul_A1e-331314915154NAC domain-containing protein 19
4dul_B1e-331314915154NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023884758.11e-105NAC domain-containing protein 83-like
SwissprotQ9FY937e-52NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2N9HGT73e-87A0A2N9HGT7_FAGSY; Uncharacterized protein
STRINGEOY028822e-70(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-54NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]