PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03576-snap-gene-0.15-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 303aa    MW: 34403.3 Da    PI: 9.8482
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03576-snap-gene-0.15-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-1497148155
                                                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  maker-scaffold03576-snap-gene-0.15-mRNA-1  97 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 148
                                                79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.2E-1495152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.14E-1395152No hitNo description
SuperFamilySSF474591.57E-1695163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.19996147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1197148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-10102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MALEALSSSE LFNFIIYDTI SATPYDNPEN SFLLENELTT PQDHQGGPLK NSSSMTRKRQ  60
PGSSESVERK QNLGVQGRKK RRRKPRACKN KEEAETQRMT HIAVERNRRK QMNEHLAVLR  120
SLMPESYVQR GDQASIVGGA IEFVKELEHL LQTLETQKLQ ILQPAGVGGL NVNEDATGTA  180
SKFMPPPFAQ FFVYPQYTWS QIPNKYTSKT KAAIADIEVT LIETHANLRI LWRKSPRQLS  240
KLVAGFQTLH LTILHLNVTT MDPLVLFSIS AKYIFNFSCM EQESRAIYST GRKNCIVPRD  300
QYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17783RKKRRRK
27784RKKRRRKP
37883KKRRRK
497108RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023923169.10.0transcription factor bHLH71-like
SwissprotQ9C7T44e-63BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2N9GA131e-142A0A2N9GA13_FAGSY; Uncharacterized protein
STRINGcassava4.1_012613m1e-130(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]