PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03587-augustus-gene-0.14-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 878aa    MW: 98589.2 Da    PI: 9.2051
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03587-augustus-gene-0.14-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3634.7e-20221088100
                                                    -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS
                                             B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 
                                                    s  ++s+rl +p +f+++++g +  s  +tle +sg++W vkl   ++ +  +l +GW eFv +
  maker-scaffold03587-augustus-gene-0.14-mRNA-2  22 SAIFSSQRLKIPVRFVRHMKGRT--SGLVTLEGPSGNRWHVKL--IQQNDDLFLHQGWPEFVMD 81 
                                                    667899**********8888774..458***************..7777789************ PP

                                                    HT--TT-EEEEEE-SSSEE..EEEEE-SS CS
                                             B3  72 ngLkegDfvvFkldgrsefelvvkvfrks 100
                                                    + +++gDf+vF++dg+  f  +v+vf+ks
  maker-scaffold03587-augustus-gene-0.14-mRNA-2  82 HFIESGDFLVFRYDGELHF--TVQVFDKS 108
                                                    *************996666..9***9985 PP
2B346.37.5e-15277369297
                                                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TT CS
                                             B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkG 64 
                                                    + ++++ +v+ s  l +p kf  +h   ++++++++l++++g+ W+v+    ++   +++l +G
  maker-scaffold03587-augustus-gene-0.14-mRNA-2 277 VRIMKSFNVSGSYTLNIPYKFSMAHL--PNSKIKIVLQNLKGECWTVNSVPtTRVNTSHTLCGG 338
                                                    56667778888899*******99995..346789**************955555556699**** PP

                                                    HHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                                             B3  65 WkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                                    W  Fv+ n++k+gD++vF+l+++ e   +v+++
  maker-scaffold03587-augustus-gene-0.14-mRNA-2 339 WIAFVRCNDIKVGDICVFELVRECEL--RVHIL 369
                                                    ********************986555..66654 PP
3B351.61.7e-165045861196
                                                    HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT CS
                                             B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkang 73 
                                                    + s  l +p +f ++h   ++++++++l++++g+ W+v+   + k+++ +++ +GW  Fv+ n+
  maker-scaffold03587-augustus-gene-0.14-mRNA-2 504 SGSYTLKIPYQFSTAHL--PNCKTEIVLRNLKGKCWTVNSVPDSKGRMgHTFCGGWMAFVRGND 565
                                                    5566799******9996..45899****************775555545*************** PP

                                                    --TT-EEEEEE-SSSEE..EEEE CS
                                             B3  74 LkegDfvvFkldgrsefelvvkv 96 
                                                    +k gD+++F+l+g+ e  ++v++
  maker-scaffold03587-augustus-gene-0.14-mRNA-2 566 VKIGDICIFELVGECE--MLVHI 586
                                                    ***********99533..47776 PP
4B359.18.1e-196257041398
                                                    TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                                             B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                                     ++lv+pk+f ++ +  k+ ++  tl+ +sg +W+v+l  + +++++++  GW++Fvk++ L+e
  maker-scaffold03587-augustus-gene-0.14-mRNA-2 625 DRQLVIPKTFSDNLK--KKLPQSATLKGPSGLTWDVEL--TTNDDTTFFNHGWQKFVKDHSLEE 684
                                                    467*******85555..458889***************..************************ PP

                                                    T-EEEEEE-SSSEE..EEEEE- CS
                                             B3  77 gDfvvFkldgrsefelvvkvfr 98 
                                                     D +vF+++g s+f   v +f+
  maker-scaffold03587-augustus-gene-0.14-mRNA-2 685 TDLLVFRYNGWSQF--DVLIFD 704
                                                    ********977888..888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.51E-2311110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.5E-2511110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.0315108IPR003340B3 DNA binding domain
CDDcd100174.69E-1915106No hitNo description
SMARTSM010193.3E-1317108IPR003340B3 DNA binding domain
PfamPF023621.6E-1722107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-22267370IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-23269370IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-20274369No hitNo description
PfamPF023624.1E-12276368IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155276372IPR003340B3 DNA binding domain
SMARTSM010198.6E-13276372IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-22486587IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-23487588IPR015300DNA-binding pseudobarrel domain
CDDcd100173.79E-19492586No hitNo description
PROSITE profilePS5086313.112494590IPR003340B3 DNA binding domain
SMARTSM010192.3E-14494590IPR003340B3 DNA binding domain
PfamPF023627.0E-14495586IPR003340B3 DNA binding domain
SuperFamilySSF1019361.67E-21612704IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.115613706IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-21616704IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-13616706IPR003340B3 DNA binding domain
CDDcd100174.22E-17623704No hitNo description
PfamPF023624.0E-16626704IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 878 aa     Download sequence    Send to blast
MDKETRQEMP NAKRPHFFDV YSAIFSSQRL KIPVRFVRHM KGRTSGLVTL EGPSGNRWHV  60
KLIQQNDDLF LHQGWPEFVM DHFIESGDFL VFRYDGELHF TVQVFDKSSC EKEAAFHSEC  120
SQDPSDLGNN MGQKRERDEG ASPSDKIFEG VPKKLRGSSS QLHLGCTVKN QEGKVDMYDG  180
EVCKHEVVAM AKTLREAICP EETRHCGSTL RNSSIVSQSK ASKEKQVLDI VQFNTKASIQ  240
SRNGKEDDLY MHGRVCLSML SAQEVAQSFT SSFPYFVRIM KSFNVSGSYT LNIPYKFSMA  300
HLPNSKIKIV LQNLKGECWT VNSVPTTRVN TSHTLCGGWI AFVRCNDIKV GDICVFELVR  360
ECELRVHILG VGREGLDCQN GKVVCSRSSG GRAPSSHKTS KVLPKKTKGK SPKASKRRQE  420
VPFSIDVRKQ CSASKTYTRA PVGSQSKAAN KKLVQRRKVI EDEVGSKTKG SMRMMLALDE  480
ERAARSFSSS FPNFVRIMKQ FNISGSYTLK IPYQFSTAHL PNCKTEIVLR NLKGKCWTVN  540
SVPDSKGRMG HTFCGGWMAF VRGNDVKIGD ICIFELVGEC EMLVHISGNV EMGDACKDWS  600
KWAEDIYWTH FQTFHFYQLL LSGFDRQLVI PKTFSDNLKK KLPQSATLKG PSGLTWDVEL  660
TTNDDTTFFN HGWQKFVKDH SLEETDLLVF RYNGWSQFDV LIFDGKNLCE KGASYFVRKC  720
GQTEHDNRCL TKKRLREGSM DDVRTPLDVD AGCTSPVNSM GDDSVTVPSE QCINSMVAKK  780
RTRQSARRVG SKKPATNGEG VKSNPSDDVA DSPTNKNGAQ VQQFASNRRP VTEDEIKSAL  840
VLAQAASSDD TFQVVMRPTH VYKRHFLGGT SKTLAPLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1411417PKASKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023914243.10.0B3 domain-containing protein Os01g0723500-like
TrEMBLA0A2N9IW660.0A0A2N9IW66_FAGSY; Uncharacterized protein
STRINGXP_010089923.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-53B3 family protein