PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold03657-augustus-gene-0.16-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bZIP

Protein Properties

Length: 457aa MW: 50651 Da PI: 6.5653

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold03657-augustus-gene-0.16-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.9	1.4e-10	170	212	4	46
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k+ rr+++NReAAr+sR+RKka++++Le+ + L++ ++L+ maker-scaffold03657-augustus-gene-0.16-mRNA-1 170 QKVLRRLAQNREAARKSRLRKKAYVQQLENSRQRLTQLEQELQ 212 5899*************************99999988877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-7	165	214	No hit	No description
SMART	SM00338	2.7E-9	167	238	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.588	169	213	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.47E-7	171	214	No hit	No description
CDD	cd14708	3.77E-24	171	223	No hit	No description
Pfam	PF00170	4.3E-7	171	212	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	174	189	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.2E-31	256	329	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MQSFKAVQAN PQLYCHSNFF LRGDGSGRDH TRFSDLGELE QSAAAFHHDD AVDLSPNSIF 60 NIKPVSVAVV PNSLHYGTLN TSIGCVDTGQ QFGIGAALGN GQHIENWGDS AMAADTSQQT 120 ETSTDVDTDD KNQVCSGFTL SLVEWFRGVQ NGALVAVDSM EQSKGKSGDQ KVLRRLAQNR 180 EAARKSRLRK KAYVQQLENS RQRLTQLEQE LQRARQQGFF IAPGISGDHS HPMAGNAALV 240 FDMDYARWLD EHQKLINDLR SAVNSHMGDN DLRLLVDGVM AHYDEIFRLK SIGARSDVFH 300 MLSGMWKTPA ERCFMWLGGF RSSELLKILG NHLEPLTDQQ LMGICNLQQS SQQAEDALSQ 360 GMEALQQSLV ETLSSTSLGP NGSGNVADYM GQMAIAMGKL ATLENFLHQA DLLRQQTLQQ 420 MHRILTTRQA ARALLVISDY ISRLRALSSL WLARPRD

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MQSFKAVQAN PQLYCHSNFF LRGDGSGRDH TRFSDLGELE QSAAAFHHDD AVDLSPNSIF  60
NIKPVSVAVV PNSLHYGTLN TSIGCVDTGQ QFGIGAALGN GQHIENWGDS AMAADTSQQT  120
ETSTDVDTDD KNQVCSGFTL SLVEWFRGVQ NGALVAVDSM EQSKGKSGDQ KVLRRLAQNR  180
EAARKSRLRK KAYVQQLENS RQRLTQLEQE LQRARQQGFF IAPGISGDHS HPMAGNAALV  240
FDMDYARWLD EHQKLINDLR SAVNSHMGDN DLRLLVDGVM AHYDEIFRLK SIGARSDVFH  300
MLSGMWKTPA ERCFMWLGGF RSSELLKILG NHLEPLTDQQ LMGICNLQQS SQQAEDALSQ  360
GMEALQQSLV ETLSSTSLGP NGSGNVADYM GQMAIAMGKL ATLENFLHQA DLLRQQTLQQ  420
MHRILTTRQA ARALLVISDY ISRLRALSSL WLARPRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023887135.1	0.0	transcription factor TGA2.2
Swissprot	Q9SX27	0.0	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A2N9GBH2	0.0	A0A2N9GBH2_FAGSY; Uncharacterized protein
STRING	EOY02112	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6022	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-163	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]