PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03734-snap-gene-0.30-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 195aa    MW: 22415.3 Da    PI: 8.3246
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03734-snap-gene-0.30-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.17.9e-108465190
                                       FAR1 51 errtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                                               ++ ++ +trtgC+a+++ + + +g+w+vt+++  HnHela
  maker-scaffold03734-snap-gene-0.30-mRNA-1  8 KKFKKLQTRTGCEASIRFTVT-NGEWKVTHFNPTHNHELA 46
                                               5668899*************9.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-7846IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MFDNLGDKKF KKLQTRTGCE ASIRFTVTNG EWKVTHFNPT HNHELAKPEE RPFLRSNQKI  60
TDAQLGVIKT SKEAGIRTIS AYSYLVEEAG GMKASSRSES VNNFFQHMAC KTMRLTEFVH  120
EYEKTSKNMR VEELEEDFRC KQGTSSQIVK NCGLLEHALS VYTRTFFKRF KLEIASTLGV  180
THQDVYSDGE SFTYE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023874110.13e-61protein FAR1-RELATED SEQUENCE 5-like, partial
RefseqXP_023879959.17e-63protein FAR1-RELATED SEQUENCE 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-11FAR1-related sequence 5