PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03880-snap-gene-0.34-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NF-YC
Protein Properties Length: 181aa    MW: 20424.8 Da    PI: 10.3962
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03880-snap-gene-0.34-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC26.11.8e-081131711169
                                      NF-YC  11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeen 69 
                                                 ++++ k h++P+ rik il++++   +i+ ea  l+ ka e f+ e+t  +   + + 
  maker-scaffold03880-snap-gene-0.34-mRNA-1 113 VDKEEAKTHRFPMNRIKTILRSQDSDLRITHEALFLVNKATEKFLEEFTKEAHACCVQD 171
                                                45677899**************999999*******************998776655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.21E-1470180IPR009072Histone-fold
PfamPF008086.4E-15122181IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.6E-14123181IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MASSKKSTTE EKKSKETKPK NTPKKKNKTT STTKVNPEKN NNNNNNNKVS NGTVSDSSSD  60
VIIIPSSSIE SGQDEKQKPN KSSGANKGTA DTKSQKHKQK KQKRQEEEVN DVVDKEEAKT  120
HRFPMNRIKT ILRSQDSDLR ITHEALFLVN KATEKFLEEF TKEAHACCVQ DHKKSLAYKH  180
L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ2074413e-97KJ207441.1 Quercus rubra microsatellite REO_433 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023918926.12e-84uncharacterized protein LOC112030471 isoform X1
RefseqXP_023918927.19e-85uncharacterized protein LOC112030471 isoform X2
TrEMBLA0A2I4EJI43e-51A0A2I4EJI4_JUGRE; DNA polymerase epsilon subunit C-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120163031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.11e-18nuclear factor Y, subunit C10