PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03897-snap-gene-0.19-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 459aa    MW: 50576 Da    PI: 9.7262
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03897-snap-gene-0.19-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-05196218223
                                                EETTTTEEESSHHHHHHHHHH.T CS
                                    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                                +CpdCg+ F   +nL+ H+ + H
  maker-scaffold03897-snap-gene-0.19-mRNA-1 196 SCPDCGEIFMKAENLELHQAVrH 218
                                                8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.0E-4194214IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280195218IPR007087Zinc finger, C2H2
PROSITE profilePS501578.767195219IPR007087Zinc finger, C2H2
SuperFamilySSF563992.3E-23250458No hitNo description
Gene3DG3DSA:3.90.228.107.5E-18251457IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MARNKNQTKP TKQIHHNQNQ NPQPQKPAKP PSWSVVRGLL SCKDLQTLQQ PPPPKQQQKR  60
QQQKELLQQQ QEQAMEENAK KCKKMKCSGS LCSNTKVMHR AETGSPELFK KRASLGSSSN  120
DASSRSMKTP LHELNGVVSS TNSSSSFSAS SNSSSAGGSF RGMPFRRFSG CYECRMVVDP  180
VLGFTRDPSL RATICSCPDC GEIFMKAENL ELHQAVRHAV SPMHKPLISF SHLIVPISQS  240
LSSVFLKSTV SELGPEDTSK NIVEIIFQSS WLKKQAPICK IDRILKVHNT QKTITKFEEY  300
RDSIKAKATK LQKKHPRCIA DGNELLRFHC TNFVCSLGVN GSSNLCNSIP QCNVCSIIKN  360
GFKVAAESGV GTELEKGILT TATSGKAHDK AGDSESNNDK RAMLVCRVIA GRVKKNMEGS  420
MEEYDSLAGA VGVYSNLDEL YVFNPKAILP CFVVIYTGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018851366.10.0PREDICTED: uncharacterized protein LOC109013663
TrEMBLA0A2I4H5D60.0A0A2I4H5D6_JUGRE; uncharacterized protein LOC109013663
STRINGXP_008233905.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84732128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-95C2H2-like zinc finger protein