PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold03936-augustus-gene-0.15-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

C2H2

Protein Properties

Length: 376aa MW: 43258.5 Da PI: 6.2987

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold03936-augustus-gene-0.15-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	299	321	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ maker-scaffold03936-augustus-gene-0.15-mRNA-1 299 FMCRKCGKAFAVRGDWRTHEKNC 321 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.88E-6	281	319	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-5	295	319	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.808	299	319	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MADPYSNFFS GLFKFNPLIH QYYPPSNPPP HPSYAHNFFI NQNLNSFPYQ TPPPSPPLRE 60 ALPLLSLSPT RQEQEQQEQE QEQEQQHKQE EEEELLVDKE QYCTAMDVDK INKHTDEEEE 120 EDEAVTVALH IGLPSPSAAE MASMLSASSS EINDKDHGDG DDSGYSINRL NKGQYWIPTP 180 SQILIGPTQF SCPVCCKTFN RYNNMQVCRT EILQFFNQRS QIMRLIYQQI EMHMWGHGSQ 240 YRKGPESLRG TQPTGMLRLP CYCCAPGCRN NIDHPRAKPL KDFRTLQTHY KRKHGIKPFM 300 CRKCGKAFAV RGDWRTHEKN CGKLWYCICG SDFKHKRSLK DHIKAFGSGH AAYGINGFEE 360 EDEPASEVEQ DNESMQ

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MADPYSNFFS GLFKFNPLIH QYYPPSNPPP HPSYAHNFFI NQNLNSFPYQ TPPPSPPLRE  60
ALPLLSLSPT RQEQEQQEQE QEQEQQHKQE EEEELLVDKE QYCTAMDVDK INKHTDEEEE  120
EDEAVTVALH IGLPSPSAAE MASMLSASSS EINDKDHGDG DDSGYSINRL NKGQYWIPTP  180
SQILIGPTQF SCPVCCKTFN RYNNMQVCRT EILQFFNQRS QIMRLIYQQI EMHMWGHGSQ  240
YRKGPESLRG TQPTGMLRLP CYCCAPGCRN NIDHPRAKPL KDFRTLQTHY KRKHGIKPFM  300
CRKCGKAFAV RGDWRTHEKN CGKLWYCICG SDFKHKRSLK DHIKAFGSGH AAYGINGFEE  360
EDEPASEVEQ DNESMQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-137	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023891366.1	0.0	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-143	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A438JL38	0.0	A0A438JL38_VITVI; Zinc finger protein WIP2
STRING	VIT_08s0007g08070.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-129	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]