PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03952-augustus-gene-0.13-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 334aa    MW: 37538.5 Da    PI: 7.7575
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03952-augustus-gene-0.13-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.4e-171461148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   rg W++eEde+l++++  +G g+W+++++  g+ R++k+c++rw +yl
  maker-scaffold03952-augustus-gene-0.13-mRNA-1 14 RGLWSPEEDEKLLNYISTYGHGCWTSVPKFAGLQRCGKSCRLRWTNYL 61
                                                   788*******************************************97 PP
2Myb_DNA-binding44.24.4e-1467110146
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                                    rg+++t+E  l+++++  lG++ W+ Ia+ ++ gRt++++k++w++
  maker-scaffold03952-augustus-gene-0.13-mRNA-1  67 RGSFSTQEAALIIELHGILGNK-WSQIAKQLP-GRTDNEIKNFWHS 110
                                                    899*******************.*********.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-26664IPR009057Homeodomain-like
PROSITE profilePS5129424.223965IPR017930Myb domain
SuperFamilySSF466894.49E-2911108IPR009057Homeodomain-like
SMARTSM007178.4E-141363IPR001005SANT/Myb domain
PfamPF002491.2E-151461IPR001005SANT/Myb domain
CDDcd001672.05E-121761No hitNo description
Gene3DG3DSA:1.10.10.604.8E-2465117IPR009057Homeodomain-like
SMARTSM007178.6E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129419.4166116IPR017930Myb domain
PfamPF002493.0E-1267109IPR001005SANT/Myb domain
CDDcd001677.63E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MRHHSCCNKQ KVKRGLWSPE EDEKLLNYIS TYGHGCWTSV PKFAGLQRCG KSCRLRWTNY  60
LRPGLKRGSF STQEAALIIE LHGILGNKWS QIAKQLPGRT DNEIKNFWHS SMKKKLISHD  120
VPAIATFPDM HCNGNSEEGF SSPIANPKWI RSSQQDQLYL PTPTPMLQGF AHVDLKLEQT  180
NYVANLVHFP PVIAPPSYSS SYDPLCSLGY QPHEQFDPNQ EDQNFSTSGI THYIGDKLIG  240
PGMTAPHYDK DPLTVPKIPK PCEIISGNYC GMPHSCVSQE LDPLARIPYF PAGFNYPYDP  300
HVPNNRMQNM DSMSSSLSIG QFVTNPNDPS SWGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885143.10.0transcription factor MYB24-like
TrEMBLA0A2N9I8M21e-167A0A2N9I8M2_FAGSY; Uncharacterized protein
STRINGEOY271411e-128(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.22e-72myb domain protein 26