PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold04069-snap-gene-0.18-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 189aa MW: 21618.4 Da PI: 4.5485

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold04069-snap-gene-0.18-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	82.5	8.7e-26	8	116	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkky 68 lppGf+F Ptdeelv ++L +k++ +++ ++i+++d++ ++Pw+++ + maker-scaffold04069-snap-gene-0.18-mRNA-1 8 LPPGFHFCPTDEELVLHFLLRKASLLPCHP-DIIPDLDLCLHDPWEFN-GI----------------- 56 79***********************999.99**********7.22................. PP NAM 69 atgkrknratksgyWkatgk.dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +n +tk+gyW + g d++++++ g++vg+kk Lvfy g+ap g++tdW+m+ey+l maker-scaffold04069-snap-gene-0.18-mRNA-1 57 -NKVTENWITKNGYWMELGIiDEPIVTSAGNKVGIKKYLVFYIGEAPGGVETDWIMQEYHL 116 .2234577999****8799**********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.24E-36	5	146	IPR003441	NAC domain
PROSITE profile	PS51005	25.952	8	147	IPR003441	NAC domain
Pfam	PF02365	3.7E-16	9	116	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MGDGSVNLPP GFHFCPTDEE LVLHFLLRKA SLLPCHPDII PDLDLCLHDP WEFNGINKVT 60 ENWITKNGYW MELGIIDEPI VTSAGNKVGI KKYLVFYIGE APGGVETDWI MQEYHLCNHD 120 LRGALHNRRG KRKIDCSKWV LCRVYERKGN FAQWLCNSDD EDNGTELSSP DEMFLSAIDD 180 EFDDTSFPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-28	5	150	14	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-28	5	150	14	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-28	5	150	14	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-28	5	150	14	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-28	5	150	17	171	NAC domain-containing protein 19
3swm_B	1e-28	5	150	17	171	NAC domain-containing protein 19
3swm_C	1e-28	5	150	17	171	NAC domain-containing protein 19
3swm_D	1e-28	5	150	17	171	NAC domain-containing protein 19
3swp_A	1e-28	5	150	17	171	NAC domain-containing protein 19
3swp_B	1e-28	5	150	17	171	NAC domain-containing protein 19
3swp_C	1e-28	5	150	17	171	NAC domain-containing protein 19
3swp_D	1e-28	5	150	17	171	NAC domain-containing protein 19
4dul_A	1e-28	5	150	14	168	NAC domain-containing protein 19
4dul_B	1e-28	5	150	14	168	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023914281.1	1e-133	NAC domain-containing protein 104-like
Swissprot	Q8GWK6	4e-51	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A2N9J5M8	1e-101	A0A2N9J5M8_FAGSY; Uncharacterized protein
STRING	VIT_04s0044g01500.t01	4e-69	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	2e-53	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]