PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04193-snap-gene-0.13-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 339aa    MW: 38145.9 Da    PI: 7.8512
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04193-snap-gene-0.13-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.83.9e-13131182155
                                                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  maker-scaffold04193-snap-gene-0.13-mRNA-1 131 QRMTHIAVERNRRKQMNEYLSVLRSLMPPS---YVQRGDQASIIGGAINFVKELE 182
                                                79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.27E-14129186No hitNo description
SuperFamilySSF474591.57E-16130194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-13130186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.555130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-10136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MALEAVVYPQ DPFNFACKDF YSWNYDLALQ EEDKALLGIH SLEQSLHANF GYSSSPSVMQ  60
NAHKEYYDPN SSSPEACTDH TIDQYCFPGE VQLYPLPSKE AFATTTTTTT TGRRKRKRTK  120
CSKNKEEIEN QRMTHIAVER NRRKQMNEYL SVLRSLMPPS YVQRGDQASI IGGAINFVKE  180
LEQLLQSMEV HKRTKQEPDT NGFSSSSSSS SSSSSSPFAQ FFTFPQYSTS ATQCNDSAAT  240
ATANESMAQQ QQQNQWAAAD IEVTMVETHA NLKILSKKQP RQLLKMVAGL QSLRLTILHL  300
NVTTFDQMVL YSVSVKVGTV QWKASRSLFS LLSILQSYC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112117RRKRKR
2131142RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872371.10.0transcription factor bHLH96-like
SwissprotQ9C7T42e-85BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2N9GHH51e-148A0A2N9GHH5_FAGSY; Uncharacterized protein
STRINGEOY153481e-122(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-82bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]