PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04202-augustus-gene-0.8-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 344aa    MW: 37855.1 Da    PI: 8.7323
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04202-augustus-gene-0.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19123172255
                                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                                   +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa+a++aa++k++g
  maker-scaffold04202-augustus-gene-0.8-mRNA-1 123 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEAAAAAYDAAALKFKG 172
                                                   7********.**********94....45************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-32122181IPR001471AP2/ERF domain
CDDcd000181.49E-21123181No hitNo description
SMARTSM003801.6E-36123186IPR001471AP2/ERF domain
PROSITE profilePS5103225.198123180IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-22123181IPR016177DNA-binding domain
PfamPF008478.0E-13123172IPR001471AP2/ERF domain
PRINTSPR003673.0E-11124135IPR001471AP2/ERF domain
PRINTSPR003673.0E-11146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MNITKWTVQT WQCRLLRLHC LSYKLSHKEI NKVDPRHGKR ALPHDASEEK KEDHPFSVDS  60
SAWVLQDPSA LVSSAFAPII GTGDSSPAQR QAGMLVGSES SMKEPATSKP THDQGNNVIR  120
RRHYRGVRQR PWGKWAAEIR DPKKAARVWL GTFETAEAAA AAYDAAALKF KGTKAKLNFP  180
ERIEGGTDQM GYFMSGHQGS SAINVTPSFP NYSFSHYAPH QSPPPPPQTL YPLPPPLSAA  240
EFPNLLQYAQ LLRSSDDNAV HYATSGLYNH NHGPLFSSST SSAICPAQME NFQSSQMGGY  300
SSSSHHHVLE NLFSSQMGST YSSGGFHFFE QGRDSQNNNP GPGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-25122186469ATERF1
3gcc_A5e-25122186469ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023924165.11e-160ethylene-responsive transcription factor ERF113-like
TrEMBLA0A2N9ECI05e-89A0A2N9ECI0_FAGSY; Uncharacterized protein
STRINGXP_010249458.15e-69(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.16e-37ERF family protein