PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04231-augustus-gene-0.29-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GATA
Protein Properties Length: 382aa    MW: 42369.4 Da    PI: 7.3392
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04231-augustus-gene-0.29-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.52.2e-19297331135
                                           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                                    C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  maker-scaffold04231-augustus-gene-0.29-mRNA-1 297 CQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRL 331
                                                    *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.24E-14290353No hitNo description
PROSITE profilePS5011412.268291327IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-15291341IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-14295329IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.62E-15296347No hitNo description
PROSITE patternPS003440297322IPR000679Zinc finger, GATA-type
PfamPF003206.3E-17297331IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MELDKADRFV EDLLDFGSDI GEGDEEDDKK RKVLCQHDPT SSSSFGVLCP EHPTSLLSVS  60
FIGYFIWCFD FFGERKLKNE FGGDSTESEA YLVTRLGLVC WTELTRTFFE RVPEFGFPES  120
SMFCNDSAES KLMASTGYWD CDRKREAAVG DGEFVEEELE WISNKDSFPA VESFILSEDP  180
GTTLPKHNSP VSVLENSTTS SHSNSNSNST NSNSNGSSNN NNNNKTLMSC CGDSFKVPGR  240
ARTKRCRRLR RDSQLFWSQQ AAAANKISKA EREVLTMRTT TTTTTTTTTT TTIGRKCQHC  300
GAEKTPQWRA GPLGPKTLCN ACGVRYKSGR LVPEYRPASS PTFSPKMHSN SHRKIVEMRK  360
QKGMGTGIGI GIGMVMKSVD KG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913533.11e-113GATA transcription factor 1-like
SwissprotQ8LAU94e-54GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A2N9EQU39e-75A0A2N9EQU3_FAGSY; Uncharacterized protein
STRINGEOY054294e-66(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.15e-50GATA transcription factor 1