PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold04233-snap-gene-0.20-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

MYB_related

Protein Properties

Length: 289aa MW: 33243.1 Da PI: 7.4968

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold04233-snap-gene-0.20-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.3	3.1e-12	120	164	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++G+g+W+ I+r +t+ q+ s+ qky maker-scaffold04233-snap-gene-0.20-mRNA-1 120 PWTEEEHRRFLMGLLKYGKGDWRNISRNYVISKTPTQVASHAQKY 164 8***************************789*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	7.186	16	71	IPR017884	SANT domain
SMART	SM00717	3.9E-9	17	69	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.97E-12	19	74	IPR009057	Homeodomain-like
CDD	cd00167	6.28E-8	20	67	No hit	No description
Pfam	PF00249	1.4E-5	20	64	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-4	21	67	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.799	113	169	IPR017930	Myb domain
SuperFamily	SSF46689	5.01E-16	115	169	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.1E-18	116	168	IPR006447	Myb domain, plants
SMART	SM00717	1.8E-10	117	167	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-10	117	163	IPR009057	Homeodomain-like
CDD	cd00167	1.79E-8	120	165	No hit	No description
Pfam	PF00249	2.5E-10	120	164	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
METLYPASFM SSSNWFMSTE WTKEENKAFE SALAMFDQES PDRWVHIAQM IPGKTVWDVM 60 KKYEELIDDV KDIEEGRVPI PVYLASSFTL ELVDNRNFDA YRKRSSRAGG ADQERKKGVP 120 WTEEEHRRFL MGLLKYGKGD WRNISRNYVI SKTPTQVASH AQKYFIRQHS GGKDKRRPSI 180 HDITTVNLTD TTSEDNKPPS YDQSSVFQPQ QKPTSTPRMS LDWNQPNDEA VMVFGATHGN 240 HLMSSPYEFG SNDFKVQGHN LYGSAHYGAL TKPHNSVFQF QPSRHQIHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-17	21	96	11	86	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023899880.1	0.0	transcription factor DIVARICATA-like
Swissprot	Q8S9H7	2e-98	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A2N9H1W5	0.0	A0A2N9H1W5_FAGSY; Uncharacterized protein
STRING	XP_008233716.1	1e-145	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF466	34	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05790.1	1e-85	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]