PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold04251-augustus-gene-0.18-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Protein Properties

Length: 246aa MW: 27193.1 Da PI: 8.2171

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold04251-augustus-gene-0.18-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.3	1.8e-15	52	140	2	98
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTH CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGW 65 k + ps+v +l lp +f++ + +++ ++ +tl de+g ++ + rk++ l++GW maker-scaffold04251-augustus-gene-0.18-mRNA-1 52 TKSMQPSHVAGGFWLGLPVDFCKLN-LPS-RDDVMTLIDEDGDEYPTIYLARKRG----LSGGW 109 58899***************666.443.4558***********555555....9 PP HHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 66 keFvkangLkegDfvvFkldgrsefelvvkvfr 98 k+F+ a++L gD vvF+l+gr++f +v ++r maker-scaffold04251-augustus-gene-0.18-mRNA-1 110 KGFAVAHHLVHGDAVVFQLIGRTTF--KVYIIR 140 *******************9988..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.14E-23	45	142	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.7E-18	46	141	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.95E-26	49	140	No hit	No description
PROSITE profile	PS50863	11.632	51	142	IPR003340	B3 DNA binding domain
SMART	SM01019	1.7E-21	51	142	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.7E-13	52	140	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
VAVDRVAIPR RIFGRQRSLT NLVLASPEAI AEADEKAEKL VSGLPPSYPI LTKSMQPSHV 60 AGGFWLGLPV DFCKLNLPSR DDVMTLIDED GDEYPTIYLA RKRGLSGGWK GFAVAHHLVH 120 GDAVVFQLIG RTTFKVYIIR VNDEAGQTPC GTETSGRGQE VHSLCQQACT YIQRSESVNH 180 FVAMDRVAMP RRIFGRKRSL SNLVLASSEA VAEAKEKAEN YYGVYHLVVQ YLKSQCSHPM 240 SLVDFG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU902987	4e-33	GU902987.1 Castanopsis fabri microsatellite CFB03 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023883749.1	1e-97	B3 domain-containing protein At5g42700-like
Refseq	XP_023905800.1	1e-97	B3 domain-containing protein At5g42700-like isoform X1
Refseq	XP_023905801.1	1e-97	B3 domain-containing protein At5g42700-like isoform X2
Swissprot	Q9FMZ4	5e-51	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A1U8KH99	6e-66	A0A1U8KH99_GOSHI; B3 domain-containing protein At5g42700-like
STRING	Gorai.002G131600.1	2e-66	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	3e-49	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]