PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04275-augustus-gene-0.10-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family AP2
Protein Properties Length: 411aa    MW: 45422.7 Da    PI: 6.3904
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04275-augustus-gene-0.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.2e-164797155
                                            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                                   + y+GVr +k+ ++Wv+e r+p   +k+ r++lg+f tae+Aa+a++ a  +l+g
  maker-scaffold04275-augustus-gene-0.10-mRNA-1 47 PVYRGVR-RKNPQKWVCEMREP---NKKSRIWLGTFPTAEMAARAHDVAVIALRG 97
                                                   68****9.777*******9998...347***********************9998 PP
2AP249.88.7e-16227277155
                                            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                    + y+GVr +k+  +Wv+e r+p   +k+ r++lg+f tae+Aa+a++ a+ +l+g
  maker-scaffold04275-augustus-gene-0.10-mRNA-1 227 PVYRGVR-RKNPWKWVCEMREP---NKKSRIWLGTFPTAEMAARAHDVAAIALRG 277
                                                    68****9.66689*****9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-114797IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-1948107IPR016177DNA-binding domain
SMARTSM003806.2E-2648111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-2848107IPR001471AP2/ERF domain
PROSITE profilePS5103221.04848105IPR001471AP2/ERF domain
PRINTSPR003676.4E-74960IPR001471AP2/ERF domain
CDDcd000183.67E-2649107No hitNo description
PRINTSPR003676.4E-77187IPR001471AP2/ERF domain
PfamPF008474.7E-11227277IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-19228287IPR016177DNA-binding domain
SMARTSM003803.4E-26228291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-28228287IPR001471AP2/ERF domain
PROSITE profilePS5103220.903228285IPR001471AP2/ERF domain
CDDcd000187.32E-27229287No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MGSDICSWEF ESGSGGIVNL SDEEVMLASQ NPKKRDGRKK FKETRHPVYR GVRRKNPQKW  60
VCEMREPNKK SRIWLGTFPT AEMAARAHDV AVIALRGRSG CLNFEDSMWR LPIPASTTAK  120
DIQRAAAEAA RAFRPPVLFE LRSSVIGIAL YVVEPKGSTL DLPLFSTYMD VLRHQSDPQY  180
LTGSDICSWE FESGSGDIVN LDDDVMLASQ NPKKRDGRKK FKETRHPVYR GVRRKNPWKW  240
VCEMREPNKK SRIWLGTFPT AEMAARAHDV AAIALRGKSG CLNFADSAWR LPVPASATAK  300
DIQRAAAEAA EAFRPVELDE GFGDESRWKL ESAAAAAVVV AAAAAVAATA AAVAVEMEEE  360
EGVFFMDEEA VFGMPGLLAN LAEGMLLPPP RCYDGDDLGT DTDMSLWSYS I
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023921459.11e-135dehydration-responsive element-binding protein 1B-like
SwissprotQ9FJ938e-69DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A3Q7FF311e-126A0A3Q7FF31_SOLLC; Uncharacterized protein
STRINGPOPTR_0012s13870.12e-84(Populus trichocarpa)
STRINGEMJ195111e-84(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.11e-59dehydration response element B1A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]