PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold04310-snap-gene-0.24-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bZIP

Protein Properties

Length: 320aa MW: 35963.6 Da PI: 9.1473

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold04310-snap-gene-0.24-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.1	1.3e-15	250	299	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r++r++kNRe+A rsR+RK+a++ eLe kv Le+eN++L+k+ +el+++ maker-scaffold04310-snap-gene-0.24-mRNA-1 250 RRQKRMIKNRESAARSRARKQAYTNELEYKVSRLEEENERLRKR-KELEQM 299 79****************************************55.666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-14	240	297	No hit	No description
SMART	SM00338	1.6E-10	246	302	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.496	248	293	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-12	250	294	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-10	250	295	No hit	No description
CDD	cd14707	2.15E-23	250	304	No hit	No description
PROSITE pattern	PS00036	0	253	268	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MGVETMGSQG GGDSSVKQLQ FQPLARQNSM YSLTLDEVQN QLGDLGKPLS SMNLDELLKN 60 VWTAEANQST GLDIEDTAQA NQTALQRQAS LSLTSALSKK TVDEVWRDIQ QSKNNQEKKS 120 RERQPTLGEM TLEDFLVKAG VVAQTSSDKK GAGPVGIDQN VVPQFSQQGQ WMQYPQPQYQ 180 HPQQSMMGVY MPGQPIPQPL HMGAGAVMDV QYPDNQMALT SPLMGTLSDT QIPGRKRGAP 240 EDMIEKTVER RQKRMIKNRE SAARSRARKQ AYTNELEYKV SRLEEENERL RKRKELEQML 300 PTAPPPEPRY QLRRTTSAPF

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023879338.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	1e-103	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A2I4GET0	0.0	A0A2I4GET0_JUGRE; ABSCISIC ACID-INSENSITIVE 5-like protein 2
STRING	XP_004306446.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1320	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	6e-80	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]