PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04373-augustus-gene-0.14-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family DBB
Protein Properties Length: 212aa    MW: 22624.7 Da    PI: 5.2637
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04373-augustus-gene-0.14-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box171.3e-05649542
                                       zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                                                    C+ +e  e++  C  ++  lC +C  ++H        H++vpl
  maker-scaffold04373-augustus-gene-0.14-mRNA-1  6 QCNACETAEATVVCCADEAVLCCSCDHKIHTAnklaskHQRVPL 49
                                                   7******99*********************66899999999986 PP
2zf-B_box27.85.3e-0961100437
                                       zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                                                    ++C+ ++e    +fC +++ llC++C +++H        H
  maker-scaffold04373-augustus-gene-0.14-mRNA-1  61 PNCDICQETVGYFFCLEDRALLCRKCDVAIHTAnsyvsnH 100
                                                    79******99*********************554555556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.296249IPR000315B-box-type zinc finger
SMARTSM003366.8E-9249IPR000315B-box-type zinc finger
CDDcd000218.25E-5549No hitNo description
SMARTSM003361.7E-1358105IPR000315B-box-type zinc finger
PROSITE profilePS501199.12958105IPR000315B-box-type zinc finger
PfamPF006431.1E-661101IPR000315B-box-type zinc finger
CDDcd000212.27E-763105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MKIQIQCNAC ETAEATVVCC ADEAVLCCSC DHKIHTANKL ASKHQRVPLS SSSSSSSSTT  60
PNCDICQETV GYFFCLEDRA LLCRKCDVAI HTANSYVSNH QRFLLTGVKV GLEATEPCAS  120
STKEKLSSVE KVSEAMLSQP MSKRGGMVSF TVESEELMPR QLSGNGTLPT NEAPLAGGGT  180
IPGGVPEWCL DEHLGLTGFS QNYGVMDCVS SM
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023899151.11e-135B-box zinc finger protein 22-like
SwissprotQ9SYM23e-63BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A2N9FCT51e-109A0A2N9FCT5_FAGSY; Uncharacterized protein
STRINGPGSC0003DMT4000181965e-83(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-62light-regulated zinc finger protein 1