PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04392-augustus-gene-0.13-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRF
Protein Properties Length: 349aa    MW: 38337.3 Da    PI: 7.0544
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04392-augustus-gene-0.13-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.46.9e-25104148145
                                            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                                    d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  maker-scaffold04392-augustus-gene-0.13-mRNA-1 104 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 148
                                                    79****************************************986 PP
2QLQ63.74.7e-224278137
                                            QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                                                   s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iq+
  maker-scaffold04392-augustus-gene-0.13-mRNA-1 42 SPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQR 78
                                                   89*********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.8E-124278IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.2E-164377IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.2394378IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.762104148IPR014977WRC domain
PfamPF088794.1E-21105147IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVETEADLCP MLLSVSGGQF TGGGGGGGGS VSGTGIGTGM RSPFTVSQWQ ELEHQALIFK  60
YMVAGLPVPP DLVLPIQRSF ESIAHRFFHH PTMGYCSFYG KKVDPEPGRC RRTDGKKWRC  120
SKDAYPDSKY CERHMHRGRN RSRKPVESQT MTQSTSSTVT SLTVTGSSSG NGSFQNLQLS  180
AFGNPQGASS GANQSQYHLD SIPYGIPNKD YRYLPGLKPE VGEHSFFSDA SGSNRNLQID  240
SQLDGTWPLM PSRVASFPAS KSSDNSMLQN DYPQHSFFNS DFTSGEPVKQ EGQSLRPFFD  300
EWPKTRESWS GLEDERSNQT SFSTTQLSIS IPMTTSDFSA TSSRSPHDN
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023925977.10.0growth-regulating factor 4-like
SwissprotQ6AWY62e-93GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLA0A2N9HXK30.0A0A2N9HXK3_FAGSY; Uncharacterized protein
STRINGEMJ206880.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47812951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-47growth-regulating factor 5