PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04424-augustus-gene-0.14-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family TALE
Protein Properties Length: 158aa    MW: 18270.6 Da    PI: 8.4595
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04424-augustus-gene-0.14-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.34.7e-07991351955
                                                    HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                                       Homeobox  19 FeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                                    F+ ++   ++++  LA+ +gL+++q+ +WF N+R ++
  maker-scaffold04424-augustus-gene-0.14-mRNA-1  99 FKCTSSAREADKVSLADLTGLDQKQINNWFINQRKRH 135
                                                    78888888899999********************985 PP
2ELK391.7e-134667122
                                            ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                                                   ELK+ LlrKYsgy++sLk+EFs
  maker-scaffold04424-augustus-gene-0.14-mRNA-1 46 ELKDKLLRKYSGYISSLKHEFS 67
                                                   9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011886.9E-84667IPR005539ELK domain
PfamPF037893.0E-114667IPR005539ELK domain
PROSITE profilePS5121310.9124666IPR005539ELK domain
PROSITE profilePS5007110.04266138IPR001356Homeobox domain
SuperFamilySSF466892.31E-1567152IPR009057Homeodomain-like
SMARTSM003892.9E-668142IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.4E-2571139IPR009057Homeodomain-like
CDDcd000861.14E-978139No hitNo description
PfamPF059201.5E-1086134IPR008422Homeobox KN domain
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
HGQVANKISL VGFCILPDEG DGSSDEDVSG GEIEGLECQR SNEDRELKDK LLRKYSGYIS  60
SLKHEFSKKK KKGKLPKEAR QTLLEWWNVH YKWPYPTNFK CTSSAREADK VSLADLTGLD  120
QKQINNWFIN QRKRHWKPSE NMQFAVMDSL YGPIFMND
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908144.12e-79homeobox protein knotted-1-like 6
SwissprotQ84JS63e-51KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A2C9VS317e-67A0A2C9VS31_MANES; Uncharacterized protein
TrEMBLA0A438KBK22e-68A0A438KBK2_VITVI; Homeobox protein knotted-1-like 6
STRINGcassava4.1_011625m1e-67(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.13e-43KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]