PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold04520-snap-gene-0.20-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

MYB_related

Protein Properties

Length: 111aa MW: 12729.8 Da PI: 9.2631

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold04520-snap-gene-0.20-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32	2.9e-10	14	42	1	29
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +g+W++eEde+l++++ +G g+W+++++ maker-scaffold04520-snap-gene-0.20-mRNA-1 14 KGPWSAEEDEKLINYISNYGHGCWSSVPK 42 79*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-27	6	88	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.538	9	89	IPR017930	Myb domain
SMART	SM00717	5.1E-9	13	87	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.74E-16	15	111	IPR009057	Homeodomain-like
CDD	cd00167	7.02E-8	16	85	No hit	No description
Pfam	PF13921	7.4E-11	17	98	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.1E-6	89	111	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MAHHSCCDKK KVKKGPWSAE EDEKLINYIS NYGHGCWSSV PKFAVLFLKF SFLLLFSSPV 60 SLYGFYEAGL QRCGKSCRLR WINYLRPDLK RGRFSPEEAV LITELHGILG N

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269\|PubMed:12753590, ECO:0000269\|PubMed:17147638, ECO:0000269\|PubMed:17329564}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by auxin. {ECO:0000269\|PubMed:23410518}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016171132.1	9e-48	transcription factor MYB26-like isoform X1
Swissprot	Q9SPG3	4e-47	MYB26_ARATH; Transcription factor MYB26
TrEMBL	G7IS44	2e-46	G7IS44_MEDTR; Myb transcription factor
STRING	AES67824	4e-47	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3014	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	2e-49	myb domain protein 26

Publications ? help Back to Top
Coego A, et al. The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J., 2014. 77(6): p. 944-53 [PMID:24456507] Yang C, et al. Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation. Plant Physiol., 2017. 175(1): p. 333-350 [PMID:28724622] Ghelli R, et al. A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis. Plant Cell, 2018. 30(3): p. 620-637 [PMID:29514943]