PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04579-augustus-gene-0.18-mRNA-3
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GATA
Protein Properties Length: 380aa    MW: 41705.2 Da    PI: 4.464
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04579-augustus-gene-0.18-mRNA-3genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.52.4e-15215251135
                                           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                                    C++Cg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  maker-scaffold04579-augustus-gene-0.18-mRNA-3 215 CQHCGISEksTPAMRRGPAGPRSLCNACGLMWANKGT 251
                                                    *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.01678113IPR010399Tify domain
SMARTSM009796.6E-878113IPR010399Tify domain
PfamPF062005.6E-1081112IPR010399Tify domain
PfamPF062036.6E-15146187IPR010402CCT domain
PROSITE profilePS5101712.759146188IPR010402CCT domain
SMARTSM004019.7E-13209262IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-11213265No hitNo description
PROSITE profilePS501148.563213265IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-14213256IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.31E-14214257No hitNo description
PfamPF003202.3E-13215251IPR000679Zinc finger, GATA-type
PROSITE patternPS003440215242IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MEMVNPQPLQ VRPLEEEEEG RENRLVQVPI EMDGDEGGSE YEYMNGRSAQ HETMNGGVGG  60
GVEVEARASG ASASASASAS RTSELTIAFE GEVYVFPAVT PDKVQAVLLL LGGCDIPSSV  120
PSSQFLLQQN SKGIGETSRG SKLSRRIASL VRFREKRKER CFEKKIRYTC RKEVAQRMHR  180
KNGQFASLKN SFKVAGENWD SSDGTPCPAP ILRRCQHCGI SEKSTPAMRR GPAGPRSLCN  240
ACGLMWANKG TLRDLTKAGR TISFDQNEPE TPADIKPSTM EPENSYANQD EQGSPDDNKP  300
VLLDPENPSM RSGEQDFLDV AEAVTEHLSI QLDNPSIGLD EQETLDELAN ASGTEFEIPE  360
NFDDQVDIDD SSMVTDWPRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023871942.10.0GATA transcription factor 19-like isoform X1
TrEMBLA0A2I4F5G60.0A0A2I4F5G6_JUGRE; GATA transcription factor 19-like
STRINGXP_008237241.11e-164(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-56ZIM-like 1