PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04652-augustus-gene-0.16-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 419aa    MW: 45186.2 Da    PI: 9.4982
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04652-augustus-gene-0.16-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033174196223
                                                    EETTTTEEESSHHHHHHHHHH.T CS
                                        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                                     C+ Cg++F+  ++L+ H+ + H
  maker-scaffold04652-augustus-gene-0.16-mRNA-1 174 ACSQCGEVFPKIESLELHQAVrH 196
                                                    6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280173196IPR007087Zinc finger, C2H2
PROSITE profilePS501578.808173201IPR007087Zinc finger, C2H2
SuperFamilySSF563991.34E-22198415No hitNo description
Gene3DG3DSA:3.90.228.105.3E-15200415IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MALLTFLPEP SSSSQTKKQQ SKRKKKQQKS NKPQQPPSSW DQIKNLLTCK QIEGSKVHDP  60
SKNGTVGTYS KLGSSCSSIC NFKDVVHGNT RVVHRADNSP ESSTVGQETG LLSRKPVTSG  120
SSTRSASGSS RSNGGATYTS SSKGMQFRKL SGCYECHMIV DPSRYPMPRS TMCACSQCGE  180
VFPKIESLEL HQAVRHAVSE LGPEDSGRNI VEIIFKSSWL KKDNPICKIE RILKVHNTQK  240
TIQRFEDCRD AVKNRALTST RKNPRCAADG NELLRFHCTS LGCTLGARGS SSLCGSVPGC  300
GVCTIIRHGF QGNNHNNKSG GALESKAVRT TASSGRAHDS LVQCTDGRKA MLVCRVIAGK  360
VKRVADDTAA EEESVSAAAA CYDSVAGSAG VYSNLEDLLV FNPRAILPCF VVIYKALDS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023914968.10.0uncharacterized protein LOC112026511
TrEMBLA0A2P5F7Z40.0A0A2P5F7Z4_TREOI; Zinc finger, C2H2 domain containing protein
STRINGXP_002510523.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103413037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-174C2H2-like zinc finger protein