PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04666-snap-gene-0.8-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 140aa    MW: 16302.4 Da    PI: 9.3836
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04666-snap-gene-0.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.61.5e-1621105290
                                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkk 70 
                                                YneY  +  Fs+rk  ++k   +g   +r++ Csk+g++e e+   + ++ ++  trtgC+a+++ + 
  maker-scaffold04666-snap-gene-0.8-mRNA-1  21 LYNEYTLNKRFSMRKGVTRKI--DGVLRQREYLCSKQGYKEFEDPC-DYKKYNKLDTRTGCHARIRFHI 86 
                                               7***************98887..******************99988.89999****************9 PP

                                      FAR1  71 ekdgkwevtkleleHnHela 90 
                                               + +g w v++++ e nHe+a
  maker-scaffold04666-snap-gene-0.8-mRNA-1  87 K-NGIWTVSHFNDERNHEFA 105
                                               9.****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-1321105IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MDFLENSLDT TADNDKKAYN LYNEYTLNKR FSMRKGVTRK IDGVLRQREY LCSKQGYKEF  60
EDPCDYKKYN KLDTRTGCHA RIRFHIKNGI WTVSHFNDER NHEFASPKEK CNLKSGSTVL  120
STHGTIIETM VSSCIKATKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023925132.13e-53protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2N9F5N93e-50A0A2N9F5N9_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.12e-09FAR1-related sequence 12