PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04780-augustus-gene-0.27-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 298aa    MW: 31855.4 Da    PI: 7.5017
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04780-augustus-gene-0.27-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.000281832211255
                                                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                            HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                    R +++ +++ +L++l+ +      +K + a++L +A+ YI+ Lq
  maker-scaffold04780-augustus-gene-0.27-mRNA-1 183 RKEKLGERITTLQQLVSPF-----GKTDTASVLHEAMGYIRFLQ 221
                                                    66788899999***99998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.836171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-11182233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-7182227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.08E-6182225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MAKNEGFVGD HLRLRGAPAA ATFSQLLLAE DDDDDDENNN GVAVAVGLDV DQTSFNYSSS  60
VFSSEKSPKM LCFGNYHQKH HQGDQLVYPP ITENIITNTN TTTPQKSGVT CSDSSSASSG  120
NNNNNSCVTL SVNTLSKPDK KRNGLGQESA QCGSTITTAA VATQRTSKRT KTANPTPAGH  180
AKRKEKLGER ITTLQQLVSP FGKTDTASVL HEAMGYIRFL QDQVQVLCSP YLQRLPSSSQ  240
LHLPKLEGGV NGGGEATRKD LRSRGLCLVP VDCTVHVANN NGADFWSPAA MGNNVFSP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023880227.11e-176transcription factor bHLH113
TrEMBLA0A2N9JA841e-141A0A2N9JA84_FAGSY; Uncharacterized protein
STRINGXP_008236390.19e-95(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103212129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.13e-46bHLH family protein