PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04781-augustus-gene-0.9-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 300aa    MW: 34577.5 Da    PI: 6.3476
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04781-augustus-gene-0.9-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-172067148
                                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                  rg+WT eEd ll+++++  G g+W++ a++ g++Rt+k+c++rw++yl
  maker-scaffold04781-augustus-gene-0.9-mRNA-1 20 RGPWTLEEDSLLIHYIAHNGEGRWNLLAKRSGLRRTGKSCRLRWLNYL 67
                                                  89********************************************97 PP
2Myb_DNA-binding482.9e-1573116146
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                                   rg+ +++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  maker-scaffold04781-augustus-gene-0.9-mRNA-1  73 RGNLSPQEQLLILELHCKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 116
                                                   7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.4451571IPR017930Myb domain
SuperFamilySSF466892.86E-2918114IPR009057Homeodomain-like
SMARTSM007176.2E-151969IPR001005SANT/Myb domain
PfamPF002496.2E-162067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-212174IPR009057Homeodomain-like
CDDcd001679.69E-112267No hitNo description
PROSITE profilePS5129419.24572122IPR017930Myb domain
SMARTSM007173.5E-1372120IPR001005SANT/Myb domain
PfamPF002492.7E-1473116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2275121IPR009057Homeodomain-like
CDDcd001677.27E-1077116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MSTCSKSISS SSEDDSELRR GPWTLEEDSL LIHYIAHNGE GRWNLLAKRS GLRRTGKSCR  60
LRWLNYLKPD VKRGNLSPQE QLLILELHCK WGNRWSKIAQ HLPGRTDNEI KNYWRTRVQK  120
QARHLKIDTN SIAFQDIIRN YWMPRLIQKI EESSSSGVLF QNSAIPQPLD SAYQHSVTTA  180
PAQVVMQGPL CLSETIQSLD HHEQNPESES MNVLQIPQFS ECPTSQFHAK VNNDDGTFVK  240
DYYYADNNSY DVEAFNLESI SPLENFEDSS SKSHVVENNW ANNDFSGSMW NMDGLWQIRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24171294110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00159DAPTransfer from AT1G25340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023896380.10.0transcription factor MYB62-like
TrEMBLA0A2N9ES281e-161A0A2N9ES28_FAGSY; Uncharacterized protein
STRINGXP_008240255.11e-129(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-82myb domain protein 62