PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04807-snap-gene-0.13-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family G2-like
Protein Properties Length: 234aa    MW: 25883.3 Da    PI: 10.3389
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04807-snap-gene-0.13-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.88.7e-27184234151
                                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                                                k+r+rWtp+LH++Fv++ve+LGG+e+AtPk+il+lm+ + Lt+ hvkSHLQ
  maker-scaffold04807-snap-gene-0.13-mRNA-1 184 KKRIRWTPDLHNQFVKCVERLGGPERATPKAILKLMETNLLTIFHVKSHLQ 234
                                                78************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.522180234IPR017930Myb domain
SuperFamilySSF466892.15E-12183234IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-20184234IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.7E-22184234IPR009057Homeodomain-like
PfamPF002491.8E-6188234IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGVQTPAMRE VAQQLNFEPP KLSNSTMTNP FGSITSALQI NERYMGFQQQ FGNSPLAASK  60
DQQFGNSPLA ISQFPSFDSQ VLSCQSSGKS FSLTDSAVQA AGSNLDFRDS LQSLVKSHLY  120
SSSDKSNVPR NNTCRSNRFP HDQNMLLGVD SAAFVRRQFS LSSYANQGLK VCHSASSRPA  180
PTLKKRIRWT PDLHNQFVKC VERLGGPERA TPKAILKLME TNLLTIFHVK SHLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-18184234252Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-18184234252Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-18184234151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-18184234151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-18184234151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-18184234151Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-18184234252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-18184234252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-18184234252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-18184234252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-18184234252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-18184234252Protein PHOSPHATE STARVATION RESPONSE 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023906754.11e-158protein PHOSPHATE STARVATION RESPONSE 2-like isoform X1
RefseqXP_023906755.11e-158protein PHOSPHATE STARVATION RESPONSE 2-like isoform X2
TrEMBLA0A2I4GI882e-59A0A2I4GI88_JUGRE; protein PHR1-LIKE 1-like isoform X2
TrEMBLA0A2I4GIA02e-59A0A2I4GIA0_JUGRE; protein PHR1-LIKE 1-like isoform X1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.27e-22G2-like family protein