PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04853-augustus-gene-0.10-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family TALE
Protein Properties Length: 174aa    MW: 20346.1 Da    PI: 7.725
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04853-augustus-gene-0.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.9e-101011362055
                                                    HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                                       Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                                    +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  maker-scaffold04853-augustus-gene-0.10-mRNA-1 101 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 136
                                                    5679*****************************985 PP
2ELK39.31.4e-135677122
                                            ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                                                   ELK++LlrKYsgyL+sLkqE+s
  maker-scaffold04853-augustus-gene-0.10-mRNA-1 56 ELKNHLLRKYSGYLSSLKQELS 77
                                                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037899.6E-115677IPR005539ELK domain
PROSITE profilePS5121311.2965676IPR005539ELK domain
SMARTSM011883.5E-75677IPR005539ELK domain
PROSITE profilePS5007112.87676139IPR001356Homeobox domain
SuperFamilySSF466892.99E-2077152IPR009057Homeodomain-like
SMARTSM003891.0E-1278143IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.1E-2881142IPR009057Homeodomain-like
CDDcd000862.40E-1288140No hitNo description
PfamPF059204.4E-1796135IPR008422Homeobox KN domain
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MLKCYAMKLV ITVQILHSHL NTDEKCEGVG SSEEDQDNSA GETELPEIDP RAEDRELKNH  60
LLRKYSGYLS SLKQELSKKK KKGKLPKDAR QKLLSWWELH YKWPYPSETE KVALAESTGL  120
DQKQINNWFI NQRKRHWKPS EDMQFMVMDG LHPQNATLYM DGHYMADGHY RLGP
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023903746.11e-111homeobox protein knotted-1-like 2
SwissprotO041356e-96KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A2N9GWS61e-108A0A2N9GWS6_FAGSY; Uncharacterized protein
TrEMBLV5K8C31e-106V5K8C3_9ROSI; KNOX transcription factor 3
STRINGEOY156242e-98(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.17e-80KNOTTED-like from Arabidopsis thaliana