PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04891-snap-gene-0.27-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 203aa    MW: 22734.5 Da    PI: 10.1155
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04891-snap-gene-0.27-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-13114159247
                                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                            Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                +rWT++E+ l++ + k+l +g+W+ I+r++ k+R++ q+ s+ qky
  maker-scaffold04891-snap-gene-0.27-mRNA-1 114 KRWTEQEHRLFLTGLKELRKGDWRGISRRFVKTRSPSQVASHAQKY 159
                                                69*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.632108164IPR017930Myb domain
SuperFamilySSF466894.06E-15110164IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-14111163IPR006447Myb domain, plants
SMARTSM007178.5E-10112162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-9112158IPR009057Homeodomain-like
PfamPF002491.4E-10114159IPR001005SANT/Myb domain
CDDcd001675.03E-8115160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MVRGSVIVRR CSQCGLSCHN FSTCSKKNNS NTTTAIASGN YNSNNTSILI GNYNNNNVSV  60
ASGNTNNAGC IKIFGVYFQN GDDHDLNKTV SIENRSSKYI ENEIEIDAER KKGKRWTEQE  120
HRLFLTGLKE LRKGDWRGIS RRFVKTRSPS QVASHAQKYF LRQAAIDKKK TSVFDLSLNE  180
AVIFLSLSPP PSPSLSHAFH RCD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023896347.12e-78transcription factor KUA1-like
TrEMBLA0A2N9EUP92e-34A0A2N9EUP9_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1686178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-28MYB_related family protein