PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04891-snap-gene-0.29-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 146aa    MW: 17112.1 Da    PI: 10.9677
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04891-snap-gene-0.29-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.7e-151763147
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                               r+rWT+eE+++++ + k+lG g+Wk I++++ ++R++ q+ s+ qky
  maker-scaffold04891-snap-gene-0.29-mRNA-1 17 RKRWTEEEHKIFLIGLKKLGRGDWKGISQKFVTTRSPSQVASHAQKY 63
                                               89********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9291268IPR017930Myb domain
SuperFamilySSF466897.18E-171367IPR009057Homeodomain-like
SMARTSM007175.0E-101666IPR001005SANT/Myb domain
TIGRFAMsTIGR015578.6E-171667IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.6E-101763IPR009057Homeodomain-like
PfamPF002492.0E-121763IPR001005SANT/Myb domain
CDDcd001671.16E-81964No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MKKKSCVDLV FAKKDRRKRW TEEEHKIFLI GLKKLGRGDW KGISQKFVTT RSPSQVASHA  60
QKYFLRKATI DKKKPRSSVF DVSLTEPVIF LSPSLLLYCS ITHIFQRCNY NHHNRASISA  120
RMSLNLKLDI LIPTPEQRYP LRRQEP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118KKKSCVDLVFAKKDRRKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9FKF95e-27M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A1Q3DA561e-29A0A1Q3DA56_CEPFO; Myb_DNA-binding domain-containing protein
TrEMBLA0A1S3UNR21e-29A0A1S3UNR2_VIGRR; transcription factor MYBS3 isoform X1
TrEMBLA0A445J9B81e-29A0A445J9B8_GLYSO; Transcription factor MYBS3
TrEMBLQ0PJI81e-29Q0PJI8_SOYBN; MYB transcription factor MYB127
STRINGGLYMA08G03330.12e-30(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.12e-29MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]