PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold04981-augustus-gene-0.2-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 358aa MW: 40445.6 Da PI: 8.5528

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold04981-augustus-gene-0.2-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.7	1.9e-56	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrd 65 lppGfrFhPtdeel+++yL kkv ++++++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd maker-scaffold04981-augustus-gene-0.2-mRNA-1 16 LPPGFRFHPTDEELISHYLYKKVIDTSFSA-RAIGEVDLNKSEPWELPWKAKMGEKEWYFFCVRD 79 79************************99.89***********888999******* PP NAM 66 kkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +ky+tg r+nrat++gyWkatgkdke+++ +++lvg+kktLvfykgrapkgekt+Wvmheyrle maker-scaffold04981-augustus-gene-0.2-mRNA-1 80 RKYPTGLRTNRATEAGYWKATGKDKEIYK-GKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 142 *************************.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.84E-63	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	58.81	16	166	IPR003441	NAC domain
Pfam	PF02365	1.4E-29	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MENFSGAYKE EEQMDLPPGF RFHPTDEELI SHYLYKKVID TSFSARAIGE VDLNKSEPWE 60 LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYKGK SLVGMKKTLV 120 FYKGRAPKGE KTNWVMHEYR LEGKLSVHNL PKTARNEWVI SRIFQKTSGG KKIHISGIVR 180 MGTFGTELDP SNLPPLMDSS PYTGKTQSVS ESAYVPCFSN IMDAQRNQEG MMNSFNSSLS 240 GVSSYQTDIL PRIPISSSFY SAQTIPLSAN QQFPGSVAMQ DHSILRALLG NQGSNLRQSF 300 KTEREMLNVS HETAMTTDMN AEISSGVSNL EIGRRPFDNQ EVPSTSAGPV DFDNLWSY

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MENFSGAYKE EEQMDLPPGF RFHPTDEELI SHYLYKKVID TSFSARAIGE VDLNKSEPWE  60
LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYKGK SLVGMKKTLV  120
FYKGRAPKGE KTNWVMHEYR LEGKLSVHNL PKTARNEWVI SRIFQKTSGG KKIHISGIVR  180
MGTFGTELDP SNLPPLMDSS PYTGKTQSVS ESAYVPCFSN IMDAQRNQEG MMNSFNSSLS  240
GVSSYQTDIL PRIPISSSFY SAQTIPLSAN QQFPGSVAMQ DHSILRALLG NQGSNLRQSF  300
KTEREMLNVS HETAMTTDMN AEISSGVSNL EIGRRPFDNQ EVPSTSAGPV DFDNLWSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	9e-55	13	172	17	174	NAC domain-containing protein 19
3swm_B	9e-55	13	172	17	174	NAC domain-containing protein 19
3swm_C	9e-55	13	172	17	174	NAC domain-containing protein 19
3swm_D	9e-55	13	172	17	174	NAC domain-containing protein 19
3swp_A	9e-55	13	172	17	174	NAC domain-containing protein 19
3swp_B	9e-55	13	172	17	174	NAC domain-containing protein 19
3swp_C	9e-55	13	172	17	174	NAC domain-containing protein 19
3swp_D	9e-55	13	172	17	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023894361.1	0.0	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-171	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2N9ERU1	0.0	A0A2N9ERU1_FAGSY; Uncharacterized protein
STRING	cassava4.1_010528m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-169	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]