PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05009-snap-gene-0.25-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 360aa    MW: 40166.2 Da    PI: 5.5257
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05009-snap-gene-0.25-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.7e-091442129
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
                            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                                               +g+W++eEde+l++++  +G g+W+++++
  maker-scaffold05009-snap-gene-0.25-mRNA-1 14 KGPWSAEEDEKLINYISNYGHGCWSSVPK 42
                                               79*************************97 PP
2Myb_DNA-binding45.41.9e-1491134146
                                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                                rgr+++eE  l+ +++  lG++ W+ Ia+ ++ gRt++++k++w++
  maker-scaffold05009-snap-gene-0.25-mRNA-1  91 RGRFSPEEAVLITELHGILGNK-WAQIAKQLP-GRTDNEVKNFWNT 134
                                                89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-26688IPR009057Homeodomain-like
PROSITE profilePS5129411.347985IPR017930Myb domain
SuperFamilySSF466893.0E-2512132IPR009057Homeodomain-like
SMARTSM007174.8E-91387IPR001005SANT/Myb domain
PfamPF002491.2E-71442IPR001005SANT/Myb domain
CDDcd001674.29E-81685No hitNo description
PROSITE profilePS5129423.46486140IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.7E-2489141IPR009057Homeodomain-like
SMARTSM007171.3E-1390138IPR001005SANT/Myb domain
PfamPF002491.6E-1291134IPR001005SANT/Myb domain
CDDcd001671.30E-993134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAHHSCCDKK KVKKGPWSAE EDEKLINYIS NYGHGCWSSV PKFAVLFLKF SFLLFFSSPV  60
SLYGFYEAGL QRCGKSCRLR WINYLRPDLK RGRFSPEEAV LITELHGILG NKWAQIAKQL  120
PGRTDNEVKN FWNTSIRKKL ISDDVPAIAT FPDVHFNGNS EEGLLSLNAN PNWILNSQQD  180
QLYLPTPTPT LQGFDHGDLK LEQINYGANL GQFPPPMAPP SNSSSYDPLW SLGYQPHENF  240
DPNQEHQNFS SSGATQHYIG DKLIGPSIAT PNYDEDPLTV PMIPNPCEII NGNFCGMSYS  300
CASLELDPLA GFPYFPVGCD YPYDPHVPNN HMEYMDAIMS SASTLSALSS GQFASNPNLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-29141407108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886534.10.0transcription factor MYB24-like
TrEMBLA0A2N9I8M21e-163A0A2N9I8M2_FAGSY; Uncharacterized protein
STRINGEOY271411e-125(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.29e-66myb domain protein 26