PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05114-augustus-gene-0.10-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 357aa    MW: 39882.1 Da    PI: 6.0998
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05114-augustus-gene-0.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.44.5e-202572148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   +g+WT+eEd++lvd+++++G g+W++ +r  g++R++k+c++rw +yl
  maker-scaffold05114-augustus-gene-0.10-mRNA-1 25 KGPWTPEEDQKLVDYIQKHGHGSWRALPRLAGLNRCGKSCRLRWTNYL 72
                                                   79********************************************97 PP
2Myb_DNA-binding54.82.1e-1778123148
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                    rg++++eE+++++++++ lG++ W++Ia  ++ gRt++++k++w+++l
  maker-scaffold05114-augustus-gene-0.10-mRNA-1  78 RGKFSEEEEQIIINLHAVLGNK-WSAIATNLP-GRTDNEIKNFWNTHL 123
                                                    89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.8052072IPR017930Myb domain
SuperFamilySSF466896.24E-3222119IPR009057Homeodomain-like
SMARTSM007175.7E-162474IPR001005SANT/Myb domain
PfamPF002495.2E-182572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-252679IPR009057Homeodomain-like
CDDcd001678.34E-132772No hitNo description
PROSITE profilePS5129427.59573127IPR017930Myb domain
SMARTSM007177.1E-1777125IPR001005SANT/Myb domain
PfamPF002493.5E-1678123IPR001005SANT/Myb domain
CDDcd001676.37E-1380123No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2780127IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MPQLLTKLQE MMGRSPSSDE NGLKKGPWTP EEDQKLVDYI QKHGHGSWRA LPRLAGLNRC  60
GKSCRLRWTN YLRPDIKRGK FSEEEEQIII NLHAVLGNKW SAIATNLPGR TDNEIKNFWN  120
THLKKKLLQM GIDPVTHRPR TDLNILSNLP QLLAAANFAN LTNPWDNVLR LQSDATQLAK  180
IQVLNNIIQV LSASPSNIEA INHLVSSSIP EHQLYEYLQM NSKLEGLVNG SAGFPTQSLT  240
QMQVNLPNFE IPQLAQPSDT QPINGLKICN GNNSDCHQLG TSYFIPPSNA LPNLVSPSPE  300
CSIVSQIENK INPNDISNPS STSTTFEPLG DMMDDEASDS YWKEFIEQAS SQPWPIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-31231275108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894664.10.0transcription factor MYB53
SwissprotQ9S9Z25e-92MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A2N9H3U20.0A0A2N9H3U2_FAGSY; Uncharacterized protein
STRINGEOY101101e-165(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-105myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]