PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05139-augustus-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 237aa    MW: 26518.2 Da    PI: 9.3132
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05139-augustus-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.5e-171360148
                                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                  +g+W+++Ed++l+d+++ +G g+W++ ++  g+ R++k+c++rw +yl
  maker-scaffold05139-augustus-gene-0.5-mRNA-1 13 KGAWSKQEDQKLIDYIRIHGEGCWRSLPKAAGLDRCGKSCRLRWINYL 60
                                                  79********************************************97 PP
2Myb_DNA-binding52.31.3e-1666110147
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                   rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
  maker-scaffold05139-augustus-gene-0.5-mRNA-1  66 RGNFGQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110
                                                   899*******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.0E-24462IPR009057Homeodomain-like
PROSITE profilePS5129417.247860IPR017930Myb domain
SuperFamilySSF466893.28E-2811107IPR009057Homeodomain-like
SMARTSM007177.8E-141262IPR001005SANT/Myb domain
PfamPF002492.6E-151360IPR001005SANT/Myb domain
CDDcd001673.12E-111560No hitNo description
PROSITE profilePS5129425.65561115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2563116IPR009057Homeodomain-like
SMARTSM007172.1E-1565113IPR001005SANT/Myb domain
PfamPF002494.9E-1566110IPR001005SANT/Myb domain
CDDcd001676.63E-1168111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MRKPCCDKEG TNKGAWSKQE DQKLIDYIRI HGEGCWRSLP KAAGLDRCGK SCRLRWINYL  60
RPDIKRGNFG QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRRKLISMGI  120
DPNNHRLNQI PPIAFSQPKC VSPAATSSHE SMNNNESSKP LIKPFANTST ADRVSDTRSG  180
VEDEISGSLD LNLDLTIAGP SASSLTLVQE KLQINSKSIV TKEVTISEQV PTLVLFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28131157108B-MYB
1h8a_C3e-281211526128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023891126.11e-171transcription repressor MYB6-like
SwissprotQ388513e-78MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A2N9J0H51e-130A0A2N9J0H5_FAGSY; Uncharacterized protein
STRINGVIT_14s0006g01620.t011e-112(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.13e-79myb domain protein 6