PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05224-augustus-gene-0.17-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family BES1
Protein Properties Length: 1033aa    MW: 114722 Da    PI: 6.0948
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05224-augustus-gene-0.17-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822140.51.6e-43481662118
                                         DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedD 65 
                                                     +g+k+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGwvve+D
  maker-scaffold05224-augustus-gene-0.17-mRNA-1  48 NKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVEAD 111
                                                    5799************************************************************ PP

                                         DUF822  66 Gttyrkgskpleeaeaagssasaspesslq..sslkssalaspvesysaspksss 118
                                                    Gttyr++   +  a a   s+s+ p+       +   sa as ++  ++s k+ +
  maker-scaffold05224-augustus-gene-0.17-mRNA-1 112 GTTYRQSPPTPAPAPAPAPSQSQLPQLAAAfpVESPLSASASAMSLTHCSVKQTT 166
                                                    *****88665534444444444333333221233344555555555555555443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.8E-4349197IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514455.12E-52254400IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.802.0E-56256400IPR013781Glycoside hydrolase, catalytic domain
PfamPF013735.6E-23281392IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.8E-12294308IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.8E-12315333IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.8E-12337358IPR001554Glycoside hydrolase, family 14
SuperFamilySSF514454.53E-51475615IPR017853Glycoside hydrolase superfamily
PfamPF013731.3E-29475614IPR001554Glycoside hydrolase, family 14
Gene3DG3DSA:3.20.20.804.0E-62476619IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514453.54E-38792956IPR017853Glycoside hydrolase superfamily
PfamPF013732.2E-13795919IPR001554Glycoside hydrolase, family 14
Gene3DG3DSA:3.20.20.801.8E-34795954IPR013781Glycoside hydrolase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1033 aa     Download sequence    Send to blast
MDEDDTITTT TAAATTNLVV PNPQAQAQTQ TRRPRGFAAV AAGGASGNKG KKEREKEKER  60
TKLRERHRRA ITSRMLAGLR QYGNFPLPAR ADMNDVLAAL AREAGWVVEA DGTTYRQSPP  120
TPAPAPAPAP SQSQLPQLAA AFPVESPLSA SASAMSLTHC SVKQTTLECS PSLLGIDDSL  180
SPASLDSSVV IGERDREMDT KYTTAASASA SPINSTSVQC RIESCISIGF VLRQGGLLVQ  240
LIQDIHSGEH GNDFTSTPYV PVYVKLPTGV INNFCQLIDP EGVRQELSHL KSLNVDGVVI  300
DCWWGIVEGW SPQKYVWSGY RDLFNIIQEF KLNLQVVMAF HEYGGNDSGD PLITLPQWVM  360
EIGKDNPDIF FTDREGRRNP ECLSWGIDKE RVLKGRTAIE GGGRESHRKL DGKGEVDRER  420
EIGGRWVMGD KTGPAAASFG DAISLHNLGG TISPARSRRR KLYGVISQAQ ARPCKIAVYF  480
DFMRSFRTEF EDLFAEGQIS AVEIGLGASG ELKYPSLSER MGWRYPGIGE FQCYDKYLQQ  540
SLCRASKLRG HSFWGKCPDN AGQYNSRPHE TGFFCERGDY DSYYGRFFLH WYAQTLIDHA  600
DNVLSLANLA FEEVKIIIKP FVLRGYNETS CGVGWGRSLS YTCGCGGQLE RDLFWRQVVD  660
LKYGCMGRGW CTKPATGTYG AVQDWELESL MVFLDLLYSS KVTEVTSIGN ILTAENLRKR  720
NIILVRPSGW WVGDASMPLE DESQEGEEVG GGVAELREVG REGGGGVTSG WGPLEHGMLQ  780
VSVFAPASTS NHAPTVPAIH WWYKTPSHAA ELTAGFYNPT NQNGYSPVFE VLRKHSVTLK  840
FVCLRLQVSG LEYDEALADP EGLSWQPLTY YLELHVDAMQ VLNSAWDRGL TVAGENALSC  900
YEREGYMRIV EMAKPRSDPD RRHFSFFVYQ QPTPLVQGTI CFSELDYFIK SMHDFTSVFG  960
GDGDAYALVI VPSRQFDYDS LVRLQVIYYH DKQAGSINLE TGCLLNPRRI TPSVKKEFQG  1020
QGRFEYTKQF CCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bya_A4e-3925995311442BETA-AMYLASE
1byb_A4e-3925995311442BETA-AMYLASE
1byc_A4e-3925995311442BETA-AMYLASE
1byd_A4e-3925995311442BETA-AMYLASE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023927863.10.0beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A0K0PUA90.0A0A0K0PUA9_CAMSI; Beta-amylase
STRINGXP_008451866.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119023032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.11e-163beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]