PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold05230-augustus-gene-0.10-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

C2H2

Protein Properties

Length: 85aa MW: 9871.7 Da PI: 6.6108

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold05230-augustus-gene-0.10-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.4e-05	39	61	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C +Fs++ +L++H + H maker-scaffold05230-augustus-gene-0.10-mRNA-1 39 ECNLCQNVFSNSTELQTHRQQsH 61 6*****************98777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	39	9	33	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	0.053	38	61	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.99	38	66	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	40	61	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
MENNNDNEFT CCHCHRIFFN SLNDFRDHNT VAHAYYRVEC NLCQNVFSNS TELQTHRQQS 60 HQPQPPPPAP APQQQQQQQA AHPQG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-