PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05469-augustus-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 546aa    MW: 59440.7 Da    PI: 9.397
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05469-augustus-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-056183123
                                                  EEETTTTEEESSHHHHHHHHHHT CS
                                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                                  ++C++C+k F r  nL+ H r H
  maker-scaffold05469-augustus-gene-0.6-mRNA-1 61 FVCEICNKGFQRDQNLQLHRRGH 83
                                                  89*******************88 PP
2zf-C2H212.60.00041137159123
                                                   EEETTTTEEESSHHHHHHHHHHT CS
                                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                   +kC++C+k +  +s+ k H +t+
  maker-scaffold05469-augustus-gene-0.6-mRNA-1 137 WKCEKCSKKYAVQSDWKAHSKTC 159
                                                   58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.32E-76083No hitNo description
Gene3DG3DSA:3.30.160.601.8E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0176183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355100102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-4125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.32E-7132157No hitNo description
SMARTSM00355140137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MMSGDSFSVA SSIGGFAQEV QNTNPNPNPA AKKKRNLPGT PDPDAEVIAL SPKTLMATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRTNKEVRKK VYICPEKTCV HHDPSRALGD  120
LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAHSKTCG TREYKCDCGT LFSRYIFYSL  180
LPCSCSLFLK DSFITHRAFC DALADESARL SSLAATNNLN FGNDSMNETV INPQPGLPLG  240
ASQFGSGFRP ELSGMAINGN SLGVDQQKPR LSLWLNQANS QLNPTDMMAN SHLYAPSSST  300
AFPEMVQAVS GNLFGSSSMP NFGNFNNQQF QGFDKSVSTS TNASLSLSAL PHEMKEEGNK  360
GNLVETLSSL YPDTQKKQSK PSIPMSATAL LQKAAQMGST TSNPSSIFGN SFGVMSSSSS  420
NTTTSFNTLN QNRNDLHQVL QNAKQQAAEN FTASGSVDGM MGSSNLSSLT TSTNSFDQLM  480
MQTSGKQSDP VALKNHPGSN AIENSLTRDF LGMGGRESQR PFLAQELAKF ASMSSAMGLS  540
QFTGNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35133217372Zinc finger protein JACKDAW
5b3h_F3e-35133217372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18799KLRQRTNKEVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023893543.10.0zinc finger protein JACKDAW-like
TrEMBLA0A2N9FCA10.0A0A2N9FCA1_FAGSY; Uncharacterized protein
STRINGPOPTR_0006s13130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-104C2H2-like zinc finger protein