PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05973-snap-gene-0.15-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Whirly
Protein Properties Length: 242aa    MW: 26718.9 Da    PI: 10.1345
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05973-snap-gene-0.15-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly1897.9e-59631991137
                                     Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdl 68 
                                                svyk+kaal+v +v+ptf++ldsg+l+++r+G +++++ +a++erkyd ek+q fals+tev+++++l
  maker-scaffold05973-snap-gene-0.15-mRNA-1  63 SVYKGKAALSVTPVLPTFTKLDSGTLVVDRRGVMMMKFLPAIGERKYDNEKRQMFALSPTEVGSMISL 130
                                                79****************************************************************** PP

                                     Whirly  69 askesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrs 136
                                                ++k+sceffhdp++ +sn+G+vrk+l ++ ++dG+G++++l+v n+++k++e f+vPv+ aefav+++
  maker-scaffold05973-snap-gene-0.15-mRNA-1 131 GPKDSCEFFHDPSMLSSNAGQVRKSLTIKAHADGTGYLISLNVVNNILKTKEFFTVPVTTAEFAVMKT 198
                                                *******************************************************************9 PP

                                     Whirly 137 l 137
                                                +
  maker-scaffold05973-snap-gene-0.15-mRNA-1 199 A 199
                                                7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.5E-7152220IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.1E-6456222IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.0E-5664198IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MMKLARLLAS RSQLSEKLLY GKAGDVKDAS RLYAFTSQAG ISNARENSAA KGYIADRIFA  60
PYSVYKGKAA LSVTPVLPTF TKLDSGTLVV DRRGVMMMKF LPAIGERKYD NEKRQMFALS  120
PTEVGSMISL GPKDSCEFFH DPSMLSSNAG QVRKSLTIKA HADGTGYLIS LNVVNNILKT  180
KEFFTVPVTT AEFAVMKTAC SFALPHILGW DRLTNHPSRE PRRTVGLPSK VDPQFLDSEW  240
DK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A6e-895721610169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B6e-895721610169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C6e-895721610169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D6e-895721610169Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023904622.11e-175single-stranded DNA-binding protein WHY2, mitochondrial isoform X1
RefseqXP_023904623.11e-175single-stranded DNA-binding protein WHY2, mitochondrial isoform X2
SwissprotD9J0341e-102WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A2I4FRC21e-140A0A2I4FRC2_JUGRE; single-stranded DNA-bindig protein WHY2, mitochondrial
STRINGXP_007147230.11e-106(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.14e-94WHIRLY 2